MotifFOXJ2.H12CORE.1.SM.B
Gene (human)FOXJ2
(GeneCards)
Gene synonyms (human)FHX
Gene (mouse)Foxj2
Gene synonyms (mouse)Fhx
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length17
ConsensusndhTRTTTACAACAWhn
GC content28.43%
Information content (bits; total / per base)19.549 / 1.15
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words2483

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (6) 0.585 0.59 0.405 0.421 0.617 0.65 1.531 1.661 15.033 21.854

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.966 0.954 0.903 0.883 0.798 0.787
best 1.0 1.0 1.0 1.0 0.999 0.999
Methyl HT-SELEX, 2 experiments median 0.993 0.991 0.969 0.962 0.916 0.912
best 1.0 1.0 1.0 1.0 0.999 0.999
Non-Methyl HT-SELEX, 4 experiments median 0.919 0.891 0.831 0.802 0.714 0.709
best 1.0 1.0 1.0 1.0 0.947 0.951

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.724 0.479 0.745 0.537
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classFork head/winged helix factors {3.3} (TFClass)
TF familyFOX {3.3.1} (TFClass)
TF subfamilyFOXJ {3.3.1.10} (TFClass)
TFClass IDTFClass: 3.3.1.10.2
HGNCHGNC:24818
MGIMGI:1926805
EntrezGene (human)GeneID:55810
(SSTAR profile)
EntrezGene (mouse)GeneID:60611
(SSTAR profile)
UniProt ID (human)FOXJ2_HUMAN
UniProt ID (mouse)FOXJ2_MOUSE
UniProt AC (human)Q9P0K8
(TFClass)
UniProt AC (mouse)Q9ES18
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 4
Methyl-HT-SELEX 2
PCM
ACGT
01431.5699.5641.5710.5
02778.0277.0581.0847.0
03536.0500.0251.01196.0
0426.0155.014.02288.0
05842.028.01608.05.0
0615.014.08.02446.0
0734.08.07.02434.0
0838.01.044.02400.0
092482.00.00.01.0
100.02482.00.01.0
112474.02.01.06.0
122458.03.07.015.0
1341.01953.05.0484.0
142299.035.0126.023.0
151601.0191.0309.0382.0
16899.0526.0225.0833.0
17784.25661.25639.25398.25
PFM
ACGT
010.1740.2820.2580.286
020.3130.1120.2340.341
030.2160.2010.1010.482
040.010.0620.0060.921
050.3390.0110.6480.002
060.0060.0060.0030.985
070.0140.0030.0030.98
080.0150.00.0180.967
091.00.00.00.0
100.01.00.00.0
110.9960.0010.00.002
120.990.0010.0030.006
130.0170.7870.0020.195
140.9260.0140.0510.009
150.6450.0770.1240.154
160.3620.2120.0910.335
170.3160.2660.2570.16
PWM
ACGT
01-0.3620.1190.0330.135
020.225-0.803-0.0660.31
03-0.146-0.216-0.9010.654
04-3.104-1.378-3.6641.302
050.304-3.0340.95-4.495
06-3.604-3.664-4.1361.369
07-2.852-4.136-4.2421.364
08-2.746-5.351-2.6061.35
091.384-5.764-5.764-5.351
10-5.7641.384-5.764-5.351
111.38-5.059-5.351-4.36
121.374-4.834-4.242-3.604
13-2.6741.144-4.495-0.248
141.307-2.824-1.582-3.217
150.946-1.172-0.694-0.484
160.369-0.165-1.0090.293
170.2330.0630.029-0.442
Standard thresholds
P-value Threshold
0.001 -1.45464
0.0005 0.25611
0.0001 3.86651