MotifFOXI1.H12INVIVO.0.SM.D
Gene (human)FOXI1
(GeneCards)
Gene synonyms (human)FKHL10, FREAC6
Gene (mouse)Foxi1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length18
ConsensusnbnWTGTTTACdbWWhvh
GC content32.81%
Information content (bits; total / per base)17.106 / 0.95
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words2006

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.998 0.996 0.995 0.992 0.98 0.975
best 0.999 0.998 0.997 0.995 0.984 0.98
Methyl HT-SELEX, 1 experiments median 0.999 0.998 0.997 0.995 0.984 0.98
best 0.999 0.998 0.997 0.995 0.984 0.98
Non-Methyl HT-SELEX, 1 experiments median 0.997 0.994 0.993 0.99 0.976 0.969
best 0.997 0.994 0.993 0.99 0.976 0.969

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.724 0.495 0.571 0.4
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classFork head/winged helix factors {3.3} (TFClass)
TF familyFOX {3.3.1} (TFClass)
TF subfamilyFOXI {3.3.1.9} (TFClass)
TFClass IDTFClass: 3.3.1.9.1
HGNCHGNC:3815
MGIMGI:1096329
EntrezGene (human)GeneID:2299
(SSTAR profile)
EntrezGene (mouse)GeneID:14233
(SSTAR profile)
UniProt ID (human)FOXI1_HUMAN
UniProt ID (mouse)FOXI1_MOUSE
UniProt AC (human)Q12951
(TFClass)
UniProt AC (mouse)Q922I5
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01402.75466.75477.75658.75
02200.0723.0508.0575.0
03626.0286.0431.0663.0
04443.0199.058.01306.0
051.06.00.01999.0
063.00.02003.00.0
070.00.00.02006.0
080.00.00.02006.0
090.00.00.02006.0
102006.00.00.00.0
110.01909.00.097.0
12879.066.0714.0347.0
1398.0226.0811.0871.0
14347.0136.093.01430.0
151083.0167.095.0661.0
161091.0338.0160.0417.0
17937.5500.5317.5250.5
18407.75840.75314.75442.75
PFM
ACGT
010.2010.2330.2380.328
020.10.360.2530.287
030.3120.1430.2150.331
040.2210.0990.0290.651
050.00.0030.00.997
060.0010.00.9990.0
070.00.00.01.0
080.00.00.01.0
090.00.00.01.0
101.00.00.00.0
110.00.9520.00.048
120.4380.0330.3560.173
130.0490.1130.4040.434
140.1730.0680.0460.713
150.540.0830.0470.33
160.5440.1680.080.208
170.4670.250.1580.125
180.2030.4190.1570.221
PWM
ACGT
01-0.218-0.072-0.0480.272
02-0.9140.3650.0130.136
030.221-0.559-0.1510.278
04-0.124-0.919-2.1290.955
05-5.156-4.154-5.5791.38
06-4.632-5.5791.382-5.579
07-5.579-5.579-5.5791.383
08-5.579-5.579-5.5791.383
09-5.579-5.579-5.5791.383
101.383-5.579-5.579-5.579
11-5.5791.334-5.579-1.627
120.56-2.0030.352-0.367
13-1.617-0.7920.4790.55
14-0.367-1.295-1.6691.045
150.768-1.092-1.6480.275
160.775-0.393-1.134-0.184
170.624-0.002-0.455-0.69
18-0.2060.515-0.464-0.124
Standard thresholds
P-value Threshold
0.001 -0.33399
0.0005 1.45571
0.0001 4.86551