| Motif | FOXF1.H12INVIVO.0.P.C |
| Gene (human) | FOXF1 (GeneCards) |
| Gene synonyms (human) | FKHL5, FREAC1 |
| Gene (mouse) | Foxf1 |
| Gene synonyms (mouse) | Fkhl5, Foxf1a, Freac1, Hfh8 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | C |
| Motif | FOXF1.H12INVIVO.0.P.C |
| Gene (human) | FOXF1 (GeneCards) |
| Gene synonyms (human) | FKHL5, FREAC1 |
| Gene (mouse) | Foxf1 |
| Gene synonyms (mouse) | Fkhl5, Foxf1a, Freac1, Hfh8 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | C |
| Motif length | 12 |
| Consensus | bbbTGTTTAYhh |
| GC content | 30.97% |
| Information content (bits; total / per base) | 12.352 / 1.029 |
| Data sources | ChIP-Seq |
| Aligned words | 1010 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 1 (5) | 0.878 | 0.895 | 0.768 | 0.806 | 0.921 | 0.928 | 3.671 | 3.812 | 266.051 | 304.721 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Fork head/winged helix factors {3.3} (TFClass) |
| TF family | FOX {3.3.1} (TFClass) |
| TF subfamily | FOXF {3.3.1.6} (TFClass) |
| TFClass ID | TFClass: 3.3.1.6.1 |
| HGNC | HGNC:3809 |
| MGI | MGI:1347470 |
| EntrezGene (human) | GeneID:2294 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:15227 (SSTAR profile) |
| UniProt ID (human) | FOXF1_HUMAN |
| UniProt ID (mouse) | FOXF1_MOUSE |
| UniProt AC (human) | Q12946 (TFClass) |
| UniProt AC (mouse) | Q61080 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 1 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | FOXF1.H12INVIVO.0.P.C.pcm |
| PWM | FOXF1.H12INVIVO.0.P.C.pwm |
| PFM | FOXF1.H12INVIVO.0.P.C.pfm |
| Alignment | FOXF1.H12INVIVO.0.P.C.words.tsv |
| Threshold to P-value map | FOXF1.H12INVIVO.0.P.C.thr |
| Motif in other formats | |
| JASPAR format | FOXF1.H12INVIVO.0.P.C_jaspar_format.txt |
| MEME format | FOXF1.H12INVIVO.0.P.C_meme_format.meme |
| Transfac format | FOXF1.H12INVIVO.0.P.C_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 123.0 | 330.0 | 216.0 | 341.0 |
| 02 | 143.0 | 355.0 | 182.0 | 330.0 |
| 03 | 139.0 | 384.0 | 218.0 | 269.0 |
| 04 | 5.0 | 3.0 | 4.0 | 998.0 |
| 05 | 28.0 | 2.0 | 980.0 | 0.0 |
| 06 | 2.0 | 3.0 | 0.0 | 1005.0 |
| 07 | 10.0 | 5.0 | 31.0 | 964.0 |
| 08 | 4.0 | 0.0 | 10.0 | 996.0 |
| 09 | 966.0 | 16.0 | 26.0 | 2.0 |
| 10 | 14.0 | 382.0 | 38.0 | 576.0 |
| 11 | 470.0 | 138.0 | 134.0 | 268.0 |
| 12 | 196.0 | 165.0 | 131.0 | 518.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.122 | 0.327 | 0.214 | 0.338 |
| 02 | 0.142 | 0.351 | 0.18 | 0.327 |
| 03 | 0.138 | 0.38 | 0.216 | 0.266 |
| 04 | 0.005 | 0.003 | 0.004 | 0.988 |
| 05 | 0.028 | 0.002 | 0.97 | 0.0 |
| 06 | 0.002 | 0.003 | 0.0 | 0.995 |
| 07 | 0.01 | 0.005 | 0.031 | 0.954 |
| 08 | 0.004 | 0.0 | 0.01 | 0.986 |
| 09 | 0.956 | 0.016 | 0.026 | 0.002 |
| 10 | 0.014 | 0.378 | 0.038 | 0.57 |
| 11 | 0.465 | 0.137 | 0.133 | 0.265 |
| 12 | 0.194 | 0.163 | 0.13 | 0.513 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.712 | 0.266 | -0.155 | 0.299 |
| 02 | -0.563 | 0.339 | -0.325 | 0.266 |
| 03 | -0.591 | 0.417 | -0.146 | 0.063 |
| 04 | -3.632 | -3.984 | -3.793 | 1.369 |
| 05 | -2.146 | -4.222 | 1.351 | -4.99 |
| 06 | -4.222 | -3.984 | -4.99 | 1.376 |
| 07 | -3.076 | -3.632 | -2.05 | 1.335 |
| 08 | -3.793 | -4.99 | -3.076 | 1.367 |
| 09 | 1.337 | -2.663 | -2.216 | -4.222 |
| 10 | -2.783 | 0.412 | -1.856 | 0.821 |
| 11 | 0.618 | -0.599 | -0.628 | 0.059 |
| 12 | -0.251 | -0.422 | -0.65 | 0.715 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.805415 |
| 0.0005 | 4.807315 |
| 0.0001 | 7.451395 |