MotifFOXF1.H12INVITRO.0.P.D
Gene (human)FOXF1
(GeneCards)
Gene synonyms (human)FKHL5, FREAC1
Gene (mouse)Foxf1
Gene synonyms (mouse)Fkhl5, Foxf1a, Freac1, Hfh8
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length12
ConsensusbbbTGTTTAYhh
GC content30.97%
Information content (bits; total / per base)12.352 / 1.029
Data sourcesChIP-Seq
Aligned words1010

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (5) 0.878 0.895 0.768 0.806 0.921 0.928 3.671 3.812 266.051 304.721
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classFork head/winged helix factors {3.3} (TFClass)
TF familyFOX {3.3.1} (TFClass)
TF subfamilyFOXF {3.3.1.6} (TFClass)
TFClass IDTFClass: 3.3.1.6.1
HGNCHGNC:3809
MGIMGI:1347470
EntrezGene (human)GeneID:2294
(SSTAR profile)
EntrezGene (mouse)GeneID:15227
(SSTAR profile)
UniProt ID (human)FOXF1_HUMAN
UniProt ID (mouse)FOXF1_MOUSE
UniProt AC (human)Q12946
(TFClass)
UniProt AC (mouse)Q61080
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01123.0330.0216.0341.0
02143.0355.0182.0330.0
03139.0384.0218.0269.0
045.03.04.0998.0
0528.02.0980.00.0
062.03.00.01005.0
0710.05.031.0964.0
084.00.010.0996.0
09966.016.026.02.0
1014.0382.038.0576.0
11470.0138.0134.0268.0
12196.0165.0131.0518.0
PFM
ACGT
010.1220.3270.2140.338
020.1420.3510.180.327
030.1380.380.2160.266
040.0050.0030.0040.988
050.0280.0020.970.0
060.0020.0030.00.995
070.010.0050.0310.954
080.0040.00.010.986
090.9560.0160.0260.002
100.0140.3780.0380.57
110.4650.1370.1330.265
120.1940.1630.130.513
PWM
ACGT
01-0.7120.266-0.1550.299
02-0.5630.339-0.3250.266
03-0.5910.417-0.1460.063
04-3.632-3.984-3.7931.369
05-2.146-4.2221.351-4.99
06-4.222-3.984-4.991.376
07-3.076-3.632-2.051.335
08-3.793-4.99-3.0761.367
091.337-2.663-2.216-4.222
10-2.7830.412-1.8560.821
110.618-0.599-0.6280.059
12-0.251-0.422-0.650.715
Standard thresholds
P-value Threshold
0.001 3.805415
0.0005 4.807315
0.0001 7.451395