MotifFOXD3.H12INVITRO.1.S.B
Gene (human)FOXD3
(GeneCards)
Gene synonyms (human)HFH2
Gene (mouse)Foxd3
Gene synonyms (mouse)Hfh2
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length20
ConsensusRhRWWAATATTTACdTWRnn
GC content24.05%
Information content (bits; total / per base)19.271 / 0.964
Data sourcesHT-SELEX
Aligned words2205

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (7) 0.513 0.529 0.34 0.345 0.561 0.604 1.373 1.558 8.444 11.377

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.702 0.708 0.588 0.608 0.539 0.56
best 0.845 0.857 0.643 0.682 0.558 0.6
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classFork head/winged helix factors {3.3} (TFClass)
TF familyFOX {3.3.1} (TFClass)
TF subfamilyFOXD {3.3.1.4} (TFClass)
TFClass IDTFClass: 3.3.1.4.3
HGNCHGNC:3804
MGIMGI:1347473
EntrezGene (human)GeneID:27022
(SSTAR profile)
EntrezGene (mouse)GeneID:15221
(SSTAR profile)
UniProt ID (human)FOXD3_HUMAN
UniProt ID (mouse)FOXD3_MOUSE
UniProt AC (human)Q9UJU5
(TFClass)
UniProt AC (mouse)Q61060
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
011373.25161.25460.25210.25
02847.5443.5323.5590.5
03957.0253.0968.027.0
04840.0185.010.01170.0
051095.0293.04.0813.0
062167.06.02.030.0
072180.01.02.022.0
080.0248.00.01957.0
091620.00.0585.00.0
100.00.00.02205.0
111.00.00.02204.0
12173.00.0287.01745.0
131951.03.082.0169.0
140.01830.073.0302.0
15879.0215.0218.0893.0
1656.0460.023.01666.0
171466.07.044.0688.0
181211.0122.0724.0148.0
19476.0490.0846.0393.0
20561.5433.5804.5405.5
PFM
ACGT
010.6230.0730.2090.095
020.3840.2010.1470.268
030.4340.1150.4390.012
040.3810.0840.0050.531
050.4970.1330.0020.369
060.9830.0030.0010.014
070.9890.00.0010.01
080.00.1120.00.888
090.7350.00.2650.0
100.00.00.01.0
110.00.00.01.0
120.0780.00.130.791
130.8850.0010.0370.077
140.00.830.0330.137
150.3990.0980.0990.405
160.0250.2090.010.756
170.6650.0030.020.312
180.5490.0550.3280.067
190.2160.2220.3840.178
200.2550.1970.3650.184
PWM
ACGT
010.911-1.221-0.18-0.958
020.429-0.217-0.5310.069
030.55-0.7750.562-2.951
040.42-1.085-3.8370.751
050.685-0.629-4.5370.387
061.366-4.246-4.948-2.852
071.372-5.243-4.948-3.141
08-5.661-0.795-5.6611.264
091.076-5.6610.059-5.661
10-5.661-5.661-5.6611.384
11-5.243-5.661-5.6611.383
12-1.151-5.661-0.651.15
131.261-4.721-1.886-1.174
14-5.6611.197-1.999-0.599
150.465-0.936-0.9220.481
16-2.257-0.18-3.11.104
170.976-4.127-2.4890.221
180.785-1.4960.272-1.306
19-0.146-0.1170.427-0.337
200.018-0.2390.377-0.306
Standard thresholds
P-value Threshold
0.001 -0.95934
0.0005 0.76191
0.0001 4.33506