MotifFOXD3.H12INVITRO.0.P.C
Gene (human)FOXD3
(GeneCards)
Gene synonyms (human)HFH2
Gene (mouse)Foxd3
Gene synonyms (mouse)Hfh2
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length14
ConsensusnnTGTYKnYhYWvn
GC content39.12%
Information content (bits; total / per base)7.704 / 0.55
Data sourcesChIP-Seq
Aligned words997

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (7) 0.684 0.717 0.495 0.559 0.753 0.786 2.175 2.496 62.921 89.347

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.626 0.614 0.57 0.566 0.535 0.54
best 0.71 0.693 0.617 0.613 0.558 0.567
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classFork head/winged helix factors {3.3} (TFClass)
TF familyFOX {3.3.1} (TFClass)
TF subfamilyFOXD {3.3.1.4} (TFClass)
TFClass IDTFClass: 3.3.1.4.3
HGNCHGNC:3804
MGIMGI:1347473
EntrezGene (human)GeneID:27022
(SSTAR profile)
EntrezGene (mouse)GeneID:15221
(SSTAR profile)
UniProt ID (human)FOXD3_HUMAN
UniProt ID (mouse)FOXD3_MOUSE
UniProt AC (human)Q9UJU5
(TFClass)
UniProt AC (mouse)Q61060
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
01196.0196.0303.0302.0
02152.0269.0242.0334.0
03177.010.044.0766.0
0436.075.0880.06.0
0561.072.029.0835.0
0643.089.063.0802.0
0750.07.0180.0760.0
08324.0167.0253.0253.0
0916.0600.053.0328.0
10274.0196.040.0487.0
1193.0234.080.0590.0
12438.029.0115.0415.0
13233.0165.0436.0163.0
14135.0308.0326.0228.0
PFM
ACGT
010.1970.1970.3040.303
020.1520.270.2430.335
030.1780.010.0440.768
040.0360.0750.8830.006
050.0610.0720.0290.838
060.0430.0890.0630.804
070.050.0070.1810.762
080.3250.1680.2540.254
090.0160.6020.0530.329
100.2750.1970.040.488
110.0930.2350.080.592
120.4390.0290.1150.416
130.2340.1650.4370.163
140.1350.3090.3270.229
PWM
ACGT
01-0.238-0.2380.1940.191
02-0.490.076-0.0290.291
03-0.34-3.064-1.7031.118
04-1.895-1.1851.257-3.481
05-1.387-1.225-2.11.204
06-1.725-1.018-1.3551.164
07-1.579-3.359-0.3231.11
080.261-0.3970.0150.015
09-2.650.874-1.5230.273
100.094-0.238-1.7940.666
11-0.974-0.063-1.1220.858
120.561-2.1-0.7660.507
13-0.067-0.4090.556-0.421
14-0.6070.210.267-0.088
Standard thresholds
P-value Threshold
0.001 5.00091
0.0005 5.66906
0.0001 7.02146