MotifFOS.H12INVIVO.2.S.C
Gene (human)FOS
(GeneCards)
Gene synonyms (human)G0S7
Gene (mouse)Fos
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype2
Quality
C
Motif length14
ConsensusnRTGACGTCATCRn
GC content47.86%
Information content (bits; total / per base)18.499 / 1.321
Data sourcesHT-SELEX
Aligned words507

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 25 (159) 0.535 0.588 0.378 0.438 0.486 0.568 1.043 1.318 1.137 8.62
Mouse 27 (180) 0.568 0.659 0.403 0.53 0.483 0.661 1.058 1.757 2.538 68.824

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 1 experiments median 0.866 0.836 0.77 0.74 0.682 0.667
best 0.866 0.836 0.77 0.74 0.682 0.667

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.473 0.015 -0.077 0.035
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyFos-related {1.1.2} (TFClass)
TF subfamilyFos {1.1.2.1} (TFClass)
TFClass IDTFClass: 1.1.2.1.1
HGNCHGNC:3796
MGIMGI:95574
EntrezGene (human)GeneID:2353
(SSTAR profile)
EntrezGene (mouse)GeneID:14281
(SSTAR profile)
UniProt ID (human)FOS_HUMAN
UniProt ID (mouse)FOS_MOUSE
UniProt AC (human)P01100
(TFClass)
UniProt AC (mouse)P01101
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 25 human, 27 mouse
HT-SELEX 1
Methyl-HT-SELEX 0
PCM
ACGT
01100.75115.75179.75110.75
02295.2518.25177.2516.25
0310.04.017.0476.0
0414.025.0422.046.0
05480.01.025.01.0
060.0500.00.07.0
070.00.0507.00.0
080.00.00.0507.0
090.0507.00.00.0
10507.00.00.00.0
110.02.00.0505.0
1245.0420.014.028.0
13287.7552.75129.7536.75
1497.25174.25105.25130.25
PFM
ACGT
010.1990.2280.3550.218
020.5820.0360.350.032
030.020.0080.0340.939
040.0280.0490.8320.091
050.9470.0020.0490.002
060.00.9860.00.014
070.00.01.00.0
080.00.00.01.0
090.01.00.00.0
101.00.00.00.0
110.00.0040.00.996
120.0890.8280.0280.055
130.5680.1040.2560.072
140.1920.3440.2080.257
PWM
ACGT
01-0.226-0.090.346-0.133
020.839-1.8680.332-1.975
03-2.407-3.139-1.9341.314
04-2.11-1.5751.194-0.992
051.323-3.916-1.575-3.916
06-4.4121.363-4.412-2.708
07-4.412-4.4121.377-4.412
08-4.412-4.412-4.4121.377
09-4.4121.377-4.412-4.412
101.377-4.412-4.412-4.412
11-4.412-3.585-4.4121.373
12-1.0141.19-2.11-1.468
130.813-0.860.023-1.209
14-0.2610.315-0.1830.027
Standard thresholds
P-value Threshold
0.001 0.27891
0.0005 1.80641
0.0001 5.035065