MotifFIGLA.H12INVIVO.0.SM.D
Gene (human)FIGLA
(GeneCards)
Gene synonyms (human)BHLHC8
Gene (mouse)Figla
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length11
ConsensusnhhCACCTGbn
GC content54.28%
Information content (bits; total / per base)12.421 / 1.129
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words1700

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 3 experiments median 0.995 0.99 0.993 0.988 0.991 0.984
best 0.996 0.992 0.995 0.991 0.993 0.988
Methyl HT-SELEX, 1 experiments median 0.996 0.992 0.995 0.991 0.993 0.988
best 0.996 0.992 0.995 0.991 0.993 0.988
Non-Methyl HT-SELEX, 2 experiments median 0.848 0.846 0.788 0.795 0.762 0.77
best 0.995 0.99 0.993 0.988 0.991 0.984

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.983 0.908 0.966 0.563
batch 2 0.986 0.846 0.958 0.583
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyTWIST {1.2.3.2} (TFClass)
TFClass IDTFClass: 1.2.3.2.8
HGNCHGNC:24669
MGIMGI:1349421
EntrezGene (human)GeneID:344018
(SSTAR profile)
EntrezGene (mouse)GeneID:26910
(SSTAR profile)
UniProt ID (human)FIGLA_HUMAN
UniProt ID (mouse)FIGLA_MOUSE
UniProt AC (human)Q6QHK4
(TFClass)
UniProt AC (mouse)O55208
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 1
PCM
ACGT
01528.25384.25339.25448.25
02861.0278.0205.0356.0
03752.75661.75122.75162.75
040.01700.00.00.0
051700.00.00.00.0
060.01479.0221.00.0
070.01700.00.00.0
080.00.00.01700.0
090.00.01700.00.0
10153.5177.5561.5807.5
11465.25302.25317.25615.25
PFM
ACGT
010.3110.2260.20.264
020.5060.1640.1210.209
030.4430.3890.0720.096
040.01.00.00.0
051.00.00.00.0
060.00.870.130.0
070.01.00.00.0
080.00.00.01.0
090.00.01.00.0
100.090.1040.330.475
110.2740.1780.1870.362
PWM
ACGT
010.217-0.1-0.2240.053
020.704-0.422-0.724-0.176
030.570.441-1.231-0.953
04-5.4361.383-5.436-5.436
051.383-5.436-5.436-5.436
06-5.4361.244-0.65-5.436
07-5.4361.383-5.436-5.436
08-5.436-5.436-5.4361.383
09-5.436-5.4361.383-5.436
10-1.011-0.8670.2770.64
110.09-0.339-0.2910.369
Standard thresholds
P-value Threshold
0.001 2.100105
0.0005 3.49984
0.0001 7.83296