MotifFEV.H12INVIVO.0.S.B
Gene (human)FEV
(GeneCards)
Gene synonyms (human)PET1
Gene (mouse)Fev
Gene synonyms (mouse)Pet1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length11
ConsensusnWCCGGAAGYv
GC content56.76%
Information content (bits; total / per base)13.773 / 1.252
Data sourcesHT-SELEX
Aligned words9061

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.612 0.616 0.455 0.468 0.542 0.558 1.345 1.427 0.0 0.041
Mouse 1 (7) 0.685 0.714 0.603 0.672 0.654 0.687 2.204 2.525 12.469 14.456

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.996 0.994 0.979 0.975 0.891 0.9
best 0.998 0.996 0.996 0.993 0.992 0.988
Methyl HT-SELEX, 1 experiments median 0.998 0.996 0.995 0.992 0.989 0.984
best 0.998 0.996 0.995 0.992 0.989 0.984
Non-Methyl HT-SELEX, 3 experiments median 0.995 0.992 0.963 0.958 0.792 0.815
best 0.998 0.996 0.996 0.993 0.992 0.988

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.953 0.876 0.95 0.708
batch 2 0.853 0.744 0.882 0.689
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classTryptophan cluster factors {3.5} (TFClass)
TF familyEts-related {3.5.2} (TFClass)
TF subfamilyETS-like {3.5.2.1} (TFClass)
TFClass IDTFClass: 3.5.2.1.8
HGNCHGNC:18562
MGIMGI:2449712
EntrezGene (human)GeneID:54738
(SSTAR profile)
EntrezGene (mouse)GeneID:260298
(SSTAR profile)
UniProt ID (human)FEV_HUMAN
UniProt ID (mouse)FEV_MOUSE
UniProt AC (human)Q99581
(TFClass)
UniProt AC (mouse)Q8QZW2
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 1 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
012519.51954.52212.52374.5
025333.0235.01563.01930.0
03323.08273.0438.027.0
0496.08965.00.00.0
050.00.09061.00.0
060.00.09061.00.0
079061.00.00.00.0
088496.00.00.0565.0
091605.0101.07343.012.0
10147.251949.25379.256585.25
112490.751548.753487.751533.75
PFM
ACGT
010.2780.2160.2440.262
020.5890.0260.1720.213
030.0360.9130.0480.003
040.0110.9890.00.0
050.00.01.00.0
060.00.01.00.0
071.00.00.00.0
080.9380.00.00.062
090.1770.0110.810.001
100.0160.2150.0420.727
110.2750.1710.3850.169
PWM
ACGT
010.106-0.147-0.0240.047
020.856-2.257-0.371-0.16
03-1.9421.295-1.639-4.35
04-3.1391.375-6.903-6.903
05-6.903-6.9031.386-6.903
06-6.903-6.9031.386-6.903
071.386-6.903-6.903-6.903
081.321-6.903-6.903-1.386
09-0.344-3.0891.175-5.068
10-2.719-0.15-1.7821.066
110.095-0.380.431-0.389
Standard thresholds
P-value Threshold
0.001 1.854365
0.0005 3.55257
0.0001 6.980865