FER3L.H12INVIVO.0.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	FER3L.H12INVIVO.0.SM.D
Gene (human)	FERD3L (GeneCards)
Gene synonyms (human)	BHLHA31, NATO3, NTWIST
Gene (mouse)	Ferd3l
Gene synonyms (mouse)	Nato, Ntwist
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	16
Consensus	nbGTAACAGCTGKYRC
GC content	52.7%
Information content (bits; total / per base)	20.476 / 1.28
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	9519

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	1.0	1.0	1.0	1.0	1.0	1.0
Overall, 2 experiments	best	1.0	1.0	1.0	1.0	1.0	1.0
Methyl HT-SELEX, 1 experiments	median	1.0	1.0	1.0	1.0	1.0	1.0
Methyl HT-SELEX, 1 experiments	best	1.0	1.0	1.0	1.0	1.0	1.0
Non-Methyl HT-SELEX, 1 experiments	median	1.0	1.0	1.0	1.0	1.0	1.0
Non-Methyl HT-SELEX, 1 experiments	best	1.0	1.0	1.0	1.0	1.0	1.0

TF superclass	Basic domains {1} (TFClass)
TF class	Basic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF family	Tal-related {1.2.3} (TFClass)
TF subfamily	Neurogenin-ATO {1.2.3.4} (TFClass)
TFClass ID	TFClass: 1.2.3.4.17
HGNC	HGNC:16660
MGI	MGI:2150010
EntrezGene (human)	GeneID:222894 (SSTAR profile)
EntrezGene (mouse)	GeneID:114712 (SSTAR profile)
UniProt ID (human)	FER3L_HUMAN
UniProt ID (mouse)	FER3L_MOUSE
UniProt AC (human)	Q96RJ6 (TFClass)
UniProt AC (mouse)	Q923Z4 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	FER3L.H12INVIVO.0.SM.D.pcm
PWM	FER3L.H12INVIVO.0.SM.D.pwm
PFM	FER3L.H12INVIVO.0.SM.D.pfm
Alignment	FER3L.H12INVIVO.0.SM.D.words.tsv
Threshold to P-value map	FER3L.H12INVIVO.0.SM.D.thr
Motif in other formats
JASPAR format	FER3L.H12INVIVO.0.SM.D_jaspar_format.txt
MEME format	FER3L.H12INVIVO.0.SM.D_meme_format.meme
Transfac format	FER3L.H12INVIVO.0.SM.D_transfac_format.txt
Homer format	FER3L.H12INVIVO.0.SM.D_homer_format_0.001.txt FER3L.H12INVIVO.0.SM.D_homer_format_0.0005.txt FER3L.H12INVIVO.0.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2486.0	1831.0	2714.0	2488.0
02	451.0	3470.0	3551.0	2047.0
03	13.0	1.0	9498.0	7.0
04	15.0	1145.0	10.0	8349.0
05	8240.0	330.0	945.0	4.0
06	9404.0	97.0	17.0	1.0
07	0.0	9519.0	0.0	0.0
08	9519.0	0.0	0.0	0.0
09	0.0	12.0	8280.0	1227.0
10	1372.0	8108.0	39.0	0.0
11	4.0	1.0	0.0	9514.0
12	0.0	0.0	9515.0	4.0
13	212.0	428.0	2369.0	6510.0
14	106.0	3134.0	1708.0	4571.0
15	3674.0	609.0	4752.0	484.0
16	493.0	7793.0	391.0	842.0

PFM

	A	C	G	T
01	0.261	0.192	0.285	0.261
02	0.047	0.365	0.373	0.215
03	0.001	0.0	0.998	0.001
04	0.002	0.12	0.001	0.877
05	0.866	0.035	0.099	0.0
06	0.988	0.01	0.002	0.0
07	0.0	1.0	0.0	0.0
08	1.0	0.0	0.0	0.0
09	0.0	0.001	0.87	0.129
10	0.144	0.852	0.004	0.0
11	0.0	0.0	0.0	0.999
12	0.0	0.0	1.0	0.0
13	0.022	0.045	0.249	0.684
14	0.011	0.329	0.179	0.48
15	0.386	0.064	0.499	0.051
16	0.052	0.819	0.041	0.088

PWM

	A	C	G	T
01	0.044	-0.262	0.131	0.044
02	-1.659	0.377	0.4	-0.15
03	-5.048	-6.585	1.383	-5.547
04	-4.926	-0.731	-5.267	1.254
05	1.241	-1.97	-0.922	-5.937
06	1.373	-3.178	-4.816	-6.585
07	-6.947	1.386	-6.947	-6.947
08	1.386	-6.947	-6.947	-6.947
09	-6.947	-5.116	1.246	-0.662
10	-0.55	1.225	-4.055	-6.947
11	-5.937	-6.585	-6.947	1.385
12	-6.947	-6.947	1.385	-5.937
13	-2.408	-1.711	-0.005	1.006
14	-3.091	0.275	-0.331	0.652
15	0.434	-1.36	0.691	-1.589
16	-1.571	1.186	-1.801	-1.037

Standard thresholds

P-value	Threshold
0.001	-4.56609
0.0005	-2.43754
0.0001	2.07616