MotifEVX2.H12INVIVO.1.S.D
Gene (human)EVX2
(GeneCards)
Gene synonyms (human)
Gene (mouse)Evx2
Gene synonyms (mouse)Evx-2
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length17
ConsensushWdWdnRYTAATTASbv
GC content30.42%
Information content (bits; total / per base)15.696 / 0.923
Data sourcesHT-SELEX
Aligned words355

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.987 0.979 0.977 0.965 0.95 0.933
best 0.989 0.983 0.98 0.969 0.96 0.944
Methyl HT-SELEX, 1 experiments median 0.989 0.983 0.98 0.969 0.96 0.944
best 0.989 0.983 0.98 0.969 0.96 0.944
Non-Methyl HT-SELEX, 3 experiments median 0.987 0.977 0.977 0.965 0.942 0.926
best 0.988 0.98 0.978 0.965 0.958 0.94

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.656 0.334 0.652 0.443
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyEVX {3.1.1.10} (TFClass)
TFClass IDTFClass: 3.1.1.10.2
HGNCHGNC:3507
MGIMGI:95462
EntrezGene (human)GeneID:344191
(SSTAR profile)
EntrezGene (mouse)GeneID:14029
(SSTAR profile)
UniProt ID (human)EVX2_HUMAN
UniProt ID (mouse)EVX2_MOUSE
UniProt AC (human)Q03828
(TFClass)
UniProt AC (mouse)P49749
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
01138.050.038.0129.0
02103.2513.2511.25227.25
03191.018.048.098.0
04208.010.039.098.0
0545.035.091.0184.0
0668.0132.081.074.0
07196.051.0104.04.0
084.0255.047.049.0
090.00.00.0355.0
10341.07.07.00.0
11355.00.00.00.0
120.00.00.0355.0
130.010.017.0328.0
14353.00.02.00.0
1539.066.0231.019.0
1612.75125.75110.75105.75
1763.091.0145.056.0
PFM
ACGT
010.3890.1410.1070.363
020.2910.0370.0320.64
030.5380.0510.1350.276
040.5860.0280.110.276
050.1270.0990.2560.518
060.1920.3720.2280.208
070.5520.1440.2930.011
080.0110.7180.1320.138
090.00.00.01.0
100.9610.020.020.0
111.00.00.00.0
120.00.00.01.0
130.00.0280.0480.924
140.9940.00.0060.0
150.110.1860.6510.054
160.0360.3540.3120.298
170.1770.2560.4080.158
PWM
ACGT
010.436-0.561-0.8270.369
020.149-1.813-1.9590.93
030.758-1.533-0.6010.098
040.842-2.063-0.8020.098
05-0.663-0.9060.0250.721
06-0.2610.392-0.09-0.179
070.783-0.5420.156-2.803
08-2.8031.045-0.621-0.581
09-4.118-4.118-4.1181.374
101.334-2.366-2.366-4.118
111.374-4.118-4.118-4.118
12-4.118-4.118-4.1181.374
13-4.118-2.063-1.5861.295
141.368-4.118-3.259-4.118
15-0.802-0.2910.947-1.483
16-1.8480.3440.2180.173
17-0.3360.0250.485-0.451
Standard thresholds
P-value Threshold
0.001 2.51751
0.0005 3.80321
0.0001 6.46786