MotifEVX2.H12INVIVO.0.SM.D
Gene (human)EVX2
(GeneCards)
Gene synonyms (human)
Gene (mouse)Evx2
Gene synonyms (mouse)Evx-2
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length13
ConsensusnbvYTAATYAbbn
GC content36.96%
Information content (bits; total / per base)11.554 / 0.889
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words8376

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.99 0.982 0.981 0.97 0.958 0.943
best 0.991 0.986 0.983 0.974 0.964 0.95
Methyl HT-SELEX, 1 experiments median 0.989 0.981 0.98 0.968 0.961 0.945
best 0.989 0.981 0.98 0.968 0.961 0.945
Non-Methyl HT-SELEX, 3 experiments median 0.99 0.984 0.982 0.971 0.956 0.941
best 0.991 0.986 0.983 0.974 0.964 0.95

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.721 0.466 0.696 0.483
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyEVX {3.1.1.10} (TFClass)
TFClass IDTFClass: 3.1.1.10.2
HGNCHGNC:3507
MGIMGI:95462
EntrezGene (human)GeneID:344191
(SSTAR profile)
EntrezGene (mouse)GeneID:14029
(SSTAR profile)
UniProt ID (human)EVX2_HUMAN
UniProt ID (mouse)EVX2_MOUSE
UniProt AC (human)Q03828
(TFClass)
UniProt AC (mouse)P49749
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
011671.02114.02500.02091.0
021220.53358.51908.51888.5
033307.01675.03003.0391.0
04463.05628.0395.01890.0
050.00.00.08376.0
068376.00.00.00.0
078376.00.00.00.0
080.01.00.08375.0
098.01648.01476.05244.0
107502.037.0723.0114.0
11439.03885.02426.01626.0
121081.53271.52003.52019.5
132148.252179.252009.252039.25
PFM
ACGT
010.1990.2520.2980.25
020.1460.4010.2280.225
030.3950.20.3590.047
040.0550.6720.0470.226
050.00.00.01.0
061.00.00.00.0
071.00.00.00.0
080.00.00.01.0
090.0010.1970.1760.626
100.8960.0040.0860.014
110.0520.4640.290.194
120.1290.3910.2390.241
130.2560.260.240.243
PWM
ACGT
01-0.2250.0090.177-0.001
02-0.5390.472-0.093-0.103
030.457-0.2230.36-1.673
04-1.5050.988-1.663-0.102
05-6.833-6.833-6.8331.385
061.385-6.833-6.833-6.833
071.385-6.833-6.833-6.833
08-6.833-6.467-6.8331.385
09-5.32-0.239-0.3490.917
101.275-3.978-1.061-2.892
11-1.5580.6180.147-0.253
12-0.660.446-0.044-0.036
130.0260.04-0.041-0.026
Standard thresholds
P-value Threshold
0.001 3.84551
0.0005 5.45256
0.0001 7.72438