Motif | EVX2.H12CORE.0.SM.B |
Gene (human) | EVX2 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Evx2 |
Gene synonyms (mouse) | Evx-2 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | EVX2.H12CORE.0.SM.B |
Gene (human) | EVX2 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Evx2 |
Gene synonyms (mouse) | Evx-2 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 13 |
Consensus | nbvYTAATYAbbn |
GC content | 36.96% |
Information content (bits; total / per base) | 11.554 / 0.889 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 8376 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.99 | 0.982 | 0.981 | 0.97 | 0.958 | 0.943 |
best | 0.991 | 0.986 | 0.983 | 0.974 | 0.964 | 0.95 | |
Methyl HT-SELEX, 1 experiments | median | 0.989 | 0.981 | 0.98 | 0.968 | 0.961 | 0.945 |
best | 0.989 | 0.981 | 0.98 | 0.968 | 0.961 | 0.945 | |
Non-Methyl HT-SELEX, 3 experiments | median | 0.99 | 0.984 | 0.982 | 0.971 | 0.956 | 0.941 |
best | 0.991 | 0.986 | 0.983 | 0.974 | 0.964 | 0.95 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 2 | 0.721 | 0.466 | 0.696 | 0.483 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | EVX {3.1.1.10} (TFClass) |
TFClass ID | TFClass: 3.1.1.10.2 |
HGNC | HGNC:3507 |
MGI | MGI:95462 |
EntrezGene (human) | GeneID:344191 (SSTAR profile) |
EntrezGene (mouse) | GeneID:14029 (SSTAR profile) |
UniProt ID (human) | EVX2_HUMAN |
UniProt ID (mouse) | EVX2_MOUSE |
UniProt AC (human) | Q03828 (TFClass) |
UniProt AC (mouse) | P49749 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 1 |
PCM | EVX2.H12CORE.0.SM.B.pcm |
PWM | EVX2.H12CORE.0.SM.B.pwm |
PFM | EVX2.H12CORE.0.SM.B.pfm |
Alignment | EVX2.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | EVX2.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | EVX2.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | EVX2.H12CORE.0.SM.B_meme_format.meme |
Transfac format | EVX2.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1671.0 | 2114.0 | 2500.0 | 2091.0 |
02 | 1220.5 | 3358.5 | 1908.5 | 1888.5 |
03 | 3307.0 | 1675.0 | 3003.0 | 391.0 |
04 | 463.0 | 5628.0 | 395.0 | 1890.0 |
05 | 0.0 | 0.0 | 0.0 | 8376.0 |
06 | 8376.0 | 0.0 | 0.0 | 0.0 |
07 | 8376.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 1.0 | 0.0 | 8375.0 |
09 | 8.0 | 1648.0 | 1476.0 | 5244.0 |
10 | 7502.0 | 37.0 | 723.0 | 114.0 |
11 | 439.0 | 3885.0 | 2426.0 | 1626.0 |
12 | 1081.5 | 3271.5 | 2003.5 | 2019.5 |
13 | 2148.25 | 2179.25 | 2009.25 | 2039.25 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.199 | 0.252 | 0.298 | 0.25 |
02 | 0.146 | 0.401 | 0.228 | 0.225 |
03 | 0.395 | 0.2 | 0.359 | 0.047 |
04 | 0.055 | 0.672 | 0.047 | 0.226 |
05 | 0.0 | 0.0 | 0.0 | 1.0 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 1.0 |
09 | 0.001 | 0.197 | 0.176 | 0.626 |
10 | 0.896 | 0.004 | 0.086 | 0.014 |
11 | 0.052 | 0.464 | 0.29 | 0.194 |
12 | 0.129 | 0.391 | 0.239 | 0.241 |
13 | 0.256 | 0.26 | 0.24 | 0.243 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.225 | 0.009 | 0.177 | -0.001 |
02 | -0.539 | 0.472 | -0.093 | -0.103 |
03 | 0.457 | -0.223 | 0.36 | -1.673 |
04 | -1.505 | 0.988 | -1.663 | -0.102 |
05 | -6.833 | -6.833 | -6.833 | 1.385 |
06 | 1.385 | -6.833 | -6.833 | -6.833 |
07 | 1.385 | -6.833 | -6.833 | -6.833 |
08 | -6.833 | -6.467 | -6.833 | 1.385 |
09 | -5.32 | -0.239 | -0.349 | 0.917 |
10 | 1.275 | -3.978 | -1.061 | -2.892 |
11 | -1.558 | 0.618 | 0.147 | -0.253 |
12 | -0.66 | 0.446 | -0.044 | -0.036 |
13 | 0.026 | 0.04 | -0.041 | -0.026 |
P-value | Threshold |
---|---|
0.001 | 3.84551 |
0.0005 | 5.45256 |
0.0001 | 7.72438 |