Motif | EVX1.H12CORE.0.SM.B |
Gene (human) | EVX1 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Evx1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | EVX1.H12CORE.0.SM.B |
Gene (human) | EVX1 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Evx1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 12 |
Consensus | nhvhTAATYAbn |
GC content | 34.11% |
Information content (bits; total / per base) | 10.609 / 0.884 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 6355 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.971 | 0.954 | 0.942 | 0.918 | 0.868 | 0.85 |
best | 0.977 | 0.963 | 0.96 | 0.938 | 0.931 | 0.904 | |
Methyl HT-SELEX, 1 experiments | median | 0.975 | 0.96 | 0.96 | 0.938 | 0.931 | 0.904 |
best | 0.975 | 0.96 | 0.96 | 0.938 | 0.931 | 0.904 | |
Non-Methyl HT-SELEX, 3 experiments | median | 0.966 | 0.948 | 0.926 | 0.9 | 0.809 | 0.8 |
best | 0.977 | 0.963 | 0.958 | 0.937 | 0.927 | 0.899 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 2 | 0.752 | 0.565 | 0.749 | 0.553 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | EVX {3.1.1.10} (TFClass) |
TFClass ID | TFClass: 3.1.1.10.1 |
HGNC | HGNC:3506 |
MGI | MGI:95461 |
EntrezGene (human) | GeneID:2128 (SSTAR profile) |
EntrezGene (mouse) | GeneID:14028 (SSTAR profile) |
UniProt ID (human) | EVX1_HUMAN |
UniProt ID (mouse) | EVX1_MOUSE |
UniProt AC (human) | P49640 (TFClass) |
UniProt AC (mouse) | P23683 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 1 |
PCM | EVX1.H12CORE.0.SM.B.pcm |
PWM | EVX1.H12CORE.0.SM.B.pwm |
PFM | EVX1.H12CORE.0.SM.B.pfm |
Alignment | EVX1.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | EVX1.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | EVX1.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | EVX1.H12CORE.0.SM.B_meme_format.meme |
Transfac format | EVX1.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1525.75 | 1781.75 | 1577.75 | 1469.75 |
02 | 1050.5 | 2532.5 | 787.5 | 1984.5 |
03 | 2258.0 | 1470.0 | 2385.0 | 242.0 |
04 | 1737.0 | 3364.0 | 468.0 | 786.0 |
05 | 0.0 | 0.0 | 0.0 | 6355.0 |
06 | 6355.0 | 0.0 | 0.0 | 0.0 |
07 | 6355.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 6355.0 |
09 | 7.0 | 2296.0 | 1284.0 | 2768.0 |
10 | 5380.0 | 55.0 | 808.0 | 112.0 |
11 | 958.5 | 2636.5 | 1379.5 | 1380.5 |
12 | 1507.75 | 1785.75 | 1401.75 | 1659.75 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.24 | 0.28 | 0.248 | 0.231 |
02 | 0.165 | 0.399 | 0.124 | 0.312 |
03 | 0.355 | 0.231 | 0.375 | 0.038 |
04 | 0.273 | 0.529 | 0.074 | 0.124 |
05 | 0.0 | 0.0 | 0.0 | 1.0 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 1.0 |
09 | 0.001 | 0.361 | 0.202 | 0.436 |
10 | 0.847 | 0.009 | 0.127 | 0.018 |
11 | 0.151 | 0.415 | 0.217 | 0.217 |
12 | 0.237 | 0.281 | 0.221 | 0.261 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.04 | 0.114 | -0.007 | -0.078 |
02 | -0.413 | 0.466 | -0.7 | 0.222 |
03 | 0.351 | -0.078 | 0.406 | -1.874 |
04 | 0.089 | 0.749 | -1.219 | -0.702 |
05 | -6.589 | -6.589 | -6.589 | 1.385 |
06 | 1.385 | -6.589 | -6.589 | -6.589 |
07 | 1.385 | -6.589 | -6.589 | -6.589 |
08 | -6.589 | -6.589 | -6.589 | 1.385 |
09 | -5.154 | 0.368 | -0.213 | 0.555 |
10 | 1.219 | -3.326 | -0.675 | -2.634 |
11 | -0.504 | 0.506 | -0.141 | -0.14 |
12 | -0.052 | 0.117 | -0.125 | 0.044 |
P-value | Threshold |
---|---|
0.001 | 4.62424 |
0.0005 | 6.050515 |
0.0001 | 7.774845 |