| Motif | ETV7.H12RSNP.0.SM.B |
| Gene (human) | ETV7 (GeneCards) |
| Gene synonyms (human) | TEL2, TELB, TREF |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | ETV7.H12RSNP.0.SM.B |
| Gene (human) | ETV7 (GeneCards) |
| Gene synonyms (human) | TEL2, TELB, TREF |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 22 |
| Consensus | ndbdWYSSGGAAGYRhhhSbbn |
| GC content | 52.58% |
| Information content (bits; total / per base) | 15.719 / 0.714 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 2491 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (7) | 0.629 | 0.647 | 0.465 | 0.484 | 0.59 | 0.6 | 1.39 | 1.456 | 2.721 | 4.699 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.962 | 0.957 | 0.877 | 0.879 | 0.795 | 0.807 |
| best | 1.0 | 0.999 | 0.996 | 0.995 | 0.959 | 0.956 | |
| Methyl HT-SELEX, 1 experiments | median | 0.924 | 0.915 | 0.757 | 0.762 | 0.63 | 0.657 |
| best | 0.924 | 0.915 | 0.757 | 0.762 | 0.63 | 0.657 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 1.0 | 0.999 | 0.996 | 0.995 | 0.959 | 0.956 |
| best | 1.0 | 0.999 | 0.996 | 0.995 | 0.959 | 0.956 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.79 | 0.41 | 0.722 | 0.433 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Tryptophan cluster factors {3.5} (TFClass) |
| TF family | Ets-related {3.5.2} (TFClass) |
| TF subfamily | ETV6-like {3.5.2.6} (TFClass) |
| TFClass ID | TFClass: 3.5.2.6.2 |
| HGNC | HGNC:18160 |
| MGI | |
| EntrezGene (human) | GeneID:51513 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | ETV7_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q9Y603 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| PCM | ETV7.H12RSNP.0.SM.B.pcm |
| PWM | ETV7.H12RSNP.0.SM.B.pwm |
| PFM | ETV7.H12RSNP.0.SM.B.pfm |
| Alignment | ETV7.H12RSNP.0.SM.B.words.tsv |
| Threshold to P-value map | ETV7.H12RSNP.0.SM.B.thr |
| Motif in other formats | |
| JASPAR format | ETV7.H12RSNP.0.SM.B_jaspar_format.txt |
| MEME format | ETV7.H12RSNP.0.SM.B_meme_format.meme |
| Transfac format | ETV7.H12RSNP.0.SM.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 638.25 | 662.25 | 544.25 | 646.25 |
| 02 | 946.5 | 381.5 | 703.5 | 459.5 |
| 03 | 329.0 | 950.0 | 370.0 | 842.0 |
| 04 | 459.0 | 246.0 | 312.0 | 1474.0 |
| 05 | 539.0 | 154.0 | 216.0 | 1582.0 |
| 06 | 401.0 | 1502.0 | 177.0 | 411.0 |
| 07 | 167.0 | 1944.0 | 306.0 | 74.0 |
| 08 | 220.0 | 1628.0 | 581.0 | 62.0 |
| 09 | 2.0 | 2.0 | 2482.0 | 5.0 |
| 10 | 0.0 | 0.0 | 2486.0 | 5.0 |
| 11 | 2483.0 | 2.0 | 0.0 | 6.0 |
| 12 | 2448.0 | 7.0 | 0.0 | 36.0 |
| 13 | 426.0 | 28.0 | 2019.0 | 18.0 |
| 14 | 86.0 | 466.0 | 51.0 | 1888.0 |
| 15 | 1500.0 | 95.0 | 701.0 | 195.0 |
| 16 | 386.0 | 1299.0 | 295.0 | 511.0 |
| 17 | 336.0 | 368.0 | 319.0 | 1468.0 |
| 18 | 352.0 | 370.0 | 330.0 | 1439.0 |
| 19 | 316.0 | 1556.0 | 320.0 | 299.0 |
| 20 | 249.0 | 1483.0 | 460.0 | 299.0 |
| 21 | 399.75 | 461.75 | 1087.75 | 541.75 |
| 22 | 551.25 | 670.25 | 781.25 | 488.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.256 | 0.266 | 0.218 | 0.259 |
| 02 | 0.38 | 0.153 | 0.282 | 0.184 |
| 03 | 0.132 | 0.381 | 0.149 | 0.338 |
| 04 | 0.184 | 0.099 | 0.125 | 0.592 |
| 05 | 0.216 | 0.062 | 0.087 | 0.635 |
| 06 | 0.161 | 0.603 | 0.071 | 0.165 |
| 07 | 0.067 | 0.78 | 0.123 | 0.03 |
| 08 | 0.088 | 0.654 | 0.233 | 0.025 |
| 09 | 0.001 | 0.001 | 0.996 | 0.002 |
| 10 | 0.0 | 0.0 | 0.998 | 0.002 |
| 11 | 0.997 | 0.001 | 0.0 | 0.002 |
| 12 | 0.983 | 0.003 | 0.0 | 0.014 |
| 13 | 0.171 | 0.011 | 0.811 | 0.007 |
| 14 | 0.035 | 0.187 | 0.02 | 0.758 |
| 15 | 0.602 | 0.038 | 0.281 | 0.078 |
| 16 | 0.155 | 0.521 | 0.118 | 0.205 |
| 17 | 0.135 | 0.148 | 0.128 | 0.589 |
| 18 | 0.141 | 0.149 | 0.132 | 0.578 |
| 19 | 0.127 | 0.625 | 0.128 | 0.12 |
| 20 | 0.1 | 0.595 | 0.185 | 0.12 |
| 21 | 0.16 | 0.185 | 0.437 | 0.217 |
| 22 | 0.221 | 0.269 | 0.314 | 0.196 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.025 | 0.061 | -0.134 | 0.037 |
| 02 | 0.418 | -0.488 | 0.122 | -0.303 |
| 03 | -0.635 | 0.421 | -0.519 | 0.301 |
| 04 | -0.304 | -0.924 | -0.688 | 0.86 |
| 05 | -0.144 | -1.388 | -1.053 | 0.93 |
| 06 | -0.438 | 0.879 | -1.25 | -0.414 |
| 07 | -1.308 | 1.136 | -0.707 | -2.107 |
| 08 | -1.035 | 0.959 | -0.069 | -2.279 |
| 09 | -5.062 | -5.062 | 1.38 | -4.498 |
| 10 | -5.767 | -5.767 | 1.382 | -4.498 |
| 11 | 1.381 | -5.062 | -5.767 | -4.363 |
| 12 | 1.367 | -4.245 | -5.767 | -2.801 |
| 13 | -0.378 | -3.038 | 1.174 | -3.444 |
| 14 | -1.96 | -0.289 | -2.468 | 1.107 |
| 15 | 0.877 | -1.863 | 0.118 | -1.154 |
| 16 | -0.476 | 0.734 | -0.744 | -0.197 |
| 17 | -0.614 | -0.524 | -0.666 | 0.856 |
| 18 | -0.568 | -0.519 | -0.632 | 0.836 |
| 19 | -0.675 | 0.914 | -0.663 | -0.73 |
| 20 | -0.912 | 0.866 | -0.302 | -0.73 |
| 21 | -0.442 | -0.298 | 0.556 | -0.139 |
| 22 | -0.122 | 0.073 | 0.226 | -0.242 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.36291 |
| 0.0005 | 3.71176 |
| 0.0001 | 6.42716 |