| Motif | ETV7.H12INVIVO.0.SM.B |
| Gene (human) | ETV7 (GeneCards) |
| Gene synonyms (human) | TEL2, TELB, TREF |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | ETV7.H12INVIVO.0.SM.B |
| Gene (human) | ETV7 (GeneCards) |
| Gene synonyms (human) | TEL2, TELB, TREF |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 19 |
| Consensus | nddhvvGGAARYdnddvvn |
| GC content | 49.04% |
| Information content (bits; total / per base) | 10.598 / 0.558 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 9936 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (7) | 0.639 | 0.65 | 0.475 | 0.492 | 0.635 | 0.646 | 1.541 | 1.589 | 2.569 | 4.77 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.978 | 0.974 | 0.898 | 0.899 | 0.809 | 0.821 |
| best | 0.999 | 0.999 | 0.995 | 0.994 | 0.962 | 0.958 | |
| Methyl HT-SELEX, 1 experiments | median | 0.956 | 0.948 | 0.801 | 0.804 | 0.656 | 0.685 |
| best | 0.956 | 0.948 | 0.801 | 0.804 | 0.656 | 0.685 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.999 | 0.999 | 0.995 | 0.994 | 0.962 | 0.958 |
| best | 0.999 | 0.999 | 0.995 | 0.994 | 0.962 | 0.958 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.803 | 0.371 | 0.67 | 0.407 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Tryptophan cluster factors {3.5} (TFClass) |
| TF family | Ets-related {3.5.2} (TFClass) |
| TF subfamily | ETV6-like {3.5.2.6} (TFClass) |
| TFClass ID | TFClass: 3.5.2.6.2 |
| HGNC | HGNC:18160 |
| MGI | |
| EntrezGene (human) | GeneID:51513 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | ETV7_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q9Y603 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| PCM | ETV7.H12INVIVO.0.SM.B.pcm |
| PWM | ETV7.H12INVIVO.0.SM.B.pwm |
| PFM | ETV7.H12INVIVO.0.SM.B.pfm |
| Alignment | ETV7.H12INVIVO.0.SM.B.words.tsv |
| Threshold to P-value map | ETV7.H12INVIVO.0.SM.B.thr |
| Motif in other formats | |
| JASPAR format | ETV7.H12INVIVO.0.SM.B_jaspar_format.txt |
| MEME format | ETV7.H12INVIVO.0.SM.B_meme_format.meme |
| Transfac format | ETV7.H12INVIVO.0.SM.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2014.0 | 2543.0 | 2042.0 | 3337.0 |
| 02 | 2321.75 | 1627.75 | 1829.75 | 4156.75 |
| 03 | 2998.0 | 1115.0 | 1744.0 | 4079.0 |
| 04 | 2342.0 | 4072.0 | 1705.0 | 1817.0 |
| 05 | 1685.0 | 4952.0 | 2125.0 | 1174.0 |
| 06 | 4127.0 | 3088.0 | 1547.0 | 1174.0 |
| 07 | 36.0 | 32.0 | 9820.0 | 48.0 |
| 08 | 13.0 | 43.0 | 9788.0 | 92.0 |
| 09 | 9837.0 | 13.0 | 12.0 | 74.0 |
| 10 | 9620.0 | 107.0 | 20.0 | 189.0 |
| 11 | 3032.0 | 202.0 | 6633.0 | 69.0 |
| 12 | 710.0 | 1880.0 | 678.0 | 6668.0 |
| 13 | 4496.0 | 739.0 | 3383.0 | 1318.0 |
| 14 | 2207.0 | 3379.0 | 2121.0 | 2229.0 |
| 15 | 2036.0 | 1818.0 | 1825.0 | 4257.0 |
| 16 | 1828.0 | 1812.0 | 1899.0 | 4397.0 |
| 17 | 1835.0 | 4467.0 | 1937.0 | 1697.0 |
| 18 | 1824.75 | 4318.75 | 2127.75 | 1664.75 |
| 19 | 2212.5 | 1889.5 | 3250.5 | 2583.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.203 | 0.256 | 0.206 | 0.336 |
| 02 | 0.234 | 0.164 | 0.184 | 0.418 |
| 03 | 0.302 | 0.112 | 0.176 | 0.411 |
| 04 | 0.236 | 0.41 | 0.172 | 0.183 |
| 05 | 0.17 | 0.498 | 0.214 | 0.118 |
| 06 | 0.415 | 0.311 | 0.156 | 0.118 |
| 07 | 0.004 | 0.003 | 0.988 | 0.005 |
| 08 | 0.001 | 0.004 | 0.985 | 0.009 |
| 09 | 0.99 | 0.001 | 0.001 | 0.007 |
| 10 | 0.968 | 0.011 | 0.002 | 0.019 |
| 11 | 0.305 | 0.02 | 0.668 | 0.007 |
| 12 | 0.071 | 0.189 | 0.068 | 0.671 |
| 13 | 0.452 | 0.074 | 0.34 | 0.133 |
| 14 | 0.222 | 0.34 | 0.213 | 0.224 |
| 15 | 0.205 | 0.183 | 0.184 | 0.428 |
| 16 | 0.184 | 0.182 | 0.191 | 0.443 |
| 17 | 0.185 | 0.45 | 0.195 | 0.171 |
| 18 | 0.184 | 0.435 | 0.214 | 0.168 |
| 19 | 0.223 | 0.19 | 0.327 | 0.26 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.21 | 0.023 | -0.196 | 0.295 |
| 02 | -0.067 | -0.422 | -0.305 | 0.514 |
| 03 | 0.188 | -0.8 | -0.353 | 0.496 |
| 04 | -0.059 | 0.494 | -0.376 | -0.312 |
| 05 | -0.388 | 0.689 | -0.156 | -0.748 |
| 06 | 0.507 | 0.217 | -0.473 | -0.748 |
| 07 | -4.173 | -4.283 | 1.374 | -3.901 |
| 08 | -5.091 | -4.005 | 1.371 | -3.272 |
| 09 | 1.376 | -5.091 | -5.158 | -3.484 |
| 10 | 1.353 | -3.124 | -4.714 | -2.565 |
| 11 | 0.199 | -2.499 | 0.982 | -3.552 |
| 12 | -1.25 | -0.278 | -1.296 | 0.987 |
| 13 | 0.593 | -1.21 | 0.309 | -0.633 |
| 14 | -0.118 | 0.307 | -0.158 | -0.108 |
| 15 | -0.199 | -0.312 | -0.308 | 0.538 |
| 16 | -0.306 | -0.315 | -0.268 | 0.571 |
| 17 | -0.302 | 0.586 | -0.248 | -0.381 |
| 18 | -0.308 | 0.553 | -0.155 | -0.4 |
| 19 | -0.116 | -0.273 | 0.269 | 0.039 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.62756 |
| 0.0005 | 5.70196 |
| 0.0001 | 7.49891 |