MotifETV7.H12INVITRO.0.SM.B
Gene (human)ETV7
(GeneCards)
Gene synonyms (human)TEL2, TELB, TREF
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length19
ConsensusddMSSGGAAGYRhhdvbbn
GC content53.93%
Information content (bits; total / per base)14.89 / 0.784
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9974

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (7) 0.637 0.652 0.479 0.499 0.611 0.627 1.463 1.551 2.125 6.509

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.972 0.967 0.892 0.894 0.816 0.83
best 1.0 1.0 0.999 0.998 0.988 0.986
Methyl HT-SELEX, 1 experiments median 0.945 0.935 0.786 0.789 0.644 0.674
best 0.945 0.935 0.786 0.789 0.644 0.674
Non-Methyl HT-SELEX, 1 experiments median 1.0 1.0 0.999 0.998 0.988 0.986
best 1.0 1.0 0.999 0.998 0.988 0.986

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.785 0.409 0.709 0.401
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classTryptophan cluster factors {3.5} (TFClass)
TF familyEts-related {3.5.2} (TFClass)
TF subfamilyETV6-like {3.5.2.6} (TFClass)
TFClass IDTFClass: 3.5.2.6.2
HGNCHGNC:18160
MGI
EntrezGene (human)GeneID:51513
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ETV7_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q9Y603
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
012004.751432.751566.754969.75
022561.25904.251161.255347.25
031626.06347.0878.01123.0
04706.07762.01307.0199.0
05865.06765.02160.0184.0
066.00.09968.00.0
070.01.09973.00.0
089951.00.00.023.0
099836.026.02.0110.0
102028.0116.07809.021.0
11350.01929.0146.07549.0
125596.0457.03161.0760.0
131741.04742.01357.02134.0
141657.01441.01420.05456.0
151451.01450.01552.05521.0
161311.06051.01353.01259.0
171133.05657.01977.01207.0
181608.51795.54147.52422.5
192564.02623.02767.02020.0
PFM
ACGT
010.2010.1440.1570.498
020.2570.0910.1160.536
030.1630.6360.0880.113
040.0710.7780.1310.02
050.0870.6780.2170.018
060.0010.00.9990.0
070.00.01.00.0
080.9980.00.00.002
090.9860.0030.00.011
100.2030.0120.7830.002
110.0350.1930.0150.757
120.5610.0460.3170.076
130.1750.4750.1360.214
140.1660.1440.1420.547
150.1450.1450.1560.554
160.1310.6070.1360.126
170.1140.5670.1980.121
180.1610.180.4160.243
190.2570.2630.2770.203
PWM
ACGT
01-0.218-0.553-0.4640.689
020.027-1.013-0.7630.762
03-0.4270.934-1.042-0.797
04-1.2591.135-0.645-2.518
05-1.0570.997-0.143-2.595
06-5.706-6.9891.385-6.989
07-6.989-6.6281.386-6.989
081.383-6.989-6.989-4.591
091.372-4.479-6.363-3.101
10-0.206-3.0491.141-4.674
11-1.958-0.256-2.8231.107
120.808-1.6930.237-1.186
13-0.3590.642-0.608-0.156
14-0.408-0.548-0.5620.783
15-0.541-0.541-0.4740.794
16-0.6420.886-0.611-0.682
17-0.7880.819-0.232-0.725
18-0.438-0.3280.508-0.029
190.0280.0510.104-0.21
Standard thresholds
P-value Threshold
0.001 2.36281
0.0005 3.85736
0.0001 6.67936