MotifETV7.H12CORE.1.P.C
Gene (human)ETV7
(GeneCards)
Gene synonyms (human)TEL2, TELB, TREF
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length7
ConsensusvRGGAAR
GC content50.36%
Information content (bits; total / per base)8.712 / 1.245
Data sourcesChIP-Seq
Aligned words1082

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (7) 0.594 0.61 0.4 0.427 0.627 0.634 1.304 1.313 1.046 1.854

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.898 0.875 0.844 0.81 0.78 0.763
best 0.945 0.925 0.925 0.886 0.927 0.881
Methyl HT-SELEX, 1 experiments median 0.851 0.825 0.763 0.734 0.633 0.645
best 0.851 0.825 0.763 0.734 0.633 0.645
Non-Methyl HT-SELEX, 1 experiments median 0.945 0.925 0.925 0.886 0.927 0.881
best 0.945 0.925 0.925 0.886 0.927 0.881

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.811 0.174 0.645 0.404
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classTryptophan cluster factors {3.5} (TFClass)
TF familyEts-related {3.5.2} (TFClass)
TF subfamilyETV6-like {3.5.2.6} (TFClass)
TFClass IDTFClass: 3.5.2.6.2
HGNCHGNC:18160
MGI
EntrezGene (human)GeneID:51513
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ETV7_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q9Y603
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01237.0472.0304.069.0
02740.092.0171.079.0
035.01.01070.06.0
0410.016.01050.06.0
051060.06.011.05.0
061028.02.046.06.0
07470.023.0550.039.0
PFM
ACGT
010.2190.4360.2810.064
020.6840.0850.1580.073
030.0050.0010.9890.006
040.0090.0150.970.006
050.980.0060.010.005
060.950.0020.0430.006
070.4340.0210.5080.036
PWM
ACGT
01-0.1310.5540.116-1.348
021.002-1.066-0.455-1.215
03-3.698-4.5961.37-3.559
04-3.143-2.7311.351-3.559
051.361-3.559-3.061-3.698
061.33-4.286-1.741-3.559
070.55-2.3980.706-1.899
Standard thresholds
P-value Threshold
0.001 5.34686
0.0005 5.792095
0.0001 7.400645