| Motif | ETV6.H12INVITRO.0.PS.A |
| Gene (human) | ETV6 (GeneCards) |
| Gene synonyms (human) | TEL, TEL1 |
| Gene (mouse) | Etv6 |
| Gene synonyms (mouse) | Tel, Tel1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | ETV6.H12INVITRO.0.PS.A |
| Gene (human) | ETV6 (GeneCards) |
| Gene synonyms (human) | TEL, TEL1 |
| Gene (mouse) | Etv6 |
| Gene synonyms (mouse) | Tel, Tel1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 10 |
| Consensus | vSCGGAAGYR |
| GC content | 60.97% |
| Information content (bits; total / per base) | 12.356 / 1.236 |
| Data sources | ChIP-Seq + HT-SELEX |
| Aligned words | 990 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 5 (35) | 0.879 | 0.918 | 0.771 | 0.816 | 0.825 | 0.885 | 2.495 | 3.088 | 142.009 | 195.523 |
| Mouse | 4 (25) | 0.834 | 0.93 | 0.79 | 0.906 | 0.842 | 0.916 | 3.612 | 4.372 | 114.398 | 342.62 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.792 | 0.774 | 0.653 | 0.658 | 0.577 | 0.594 |
| best | 0.859 | 0.844 | 0.694 | 0.702 | 0.597 | 0.619 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Tryptophan cluster factors {3.5} (TFClass) |
| TF family | Ets-related {3.5.2} (TFClass) |
| TF subfamily | ETV6-like {3.5.2.6} (TFClass) |
| TFClass ID | TFClass: 3.5.2.6.1 |
| HGNC | HGNC:3495 |
| MGI | MGI:109336 |
| EntrezGene (human) | GeneID:2120 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:14011 (SSTAR profile) |
| UniProt ID (human) | ETV6_HUMAN |
| UniProt ID (mouse) | ETV6_MOUSE |
| UniProt AC (human) | P41212 (TFClass) |
| UniProt AC (mouse) | P97360 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 5 human, 4 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| PCM | ETV6.H12INVITRO.0.PS.A.pcm |
| PWM | ETV6.H12INVITRO.0.PS.A.pwm |
| PFM | ETV6.H12INVITRO.0.PS.A.pfm |
| Alignment | ETV6.H12INVITRO.0.PS.A.words.tsv |
| Threshold to P-value map | ETV6.H12INVITRO.0.PS.A.thr |
| Motif in other formats | |
| JASPAR format | ETV6.H12INVITRO.0.PS.A_jaspar_format.txt |
| MEME format | ETV6.H12INVITRO.0.PS.A_meme_format.meme |
| Transfac format | ETV6.H12INVITRO.0.PS.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 443.0 | 207.0 | 280.0 | 60.0 |
| 02 | 87.0 | 730.0 | 163.0 | 10.0 |
| 03 | 122.0 | 847.0 | 10.0 | 11.0 |
| 04 | 11.0 | 2.0 | 964.0 | 13.0 |
| 05 | 11.0 | 13.0 | 964.0 | 2.0 |
| 06 | 987.0 | 2.0 | 0.0 | 1.0 |
| 07 | 974.0 | 2.0 | 6.0 | 8.0 |
| 08 | 109.0 | 27.0 | 853.0 | 1.0 |
| 09 | 48.0 | 230.0 | 30.0 | 682.0 |
| 10 | 165.0 | 96.0 | 610.0 | 119.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.447 | 0.209 | 0.283 | 0.061 |
| 02 | 0.088 | 0.737 | 0.165 | 0.01 |
| 03 | 0.123 | 0.856 | 0.01 | 0.011 |
| 04 | 0.011 | 0.002 | 0.974 | 0.013 |
| 05 | 0.011 | 0.013 | 0.974 | 0.002 |
| 06 | 0.997 | 0.002 | 0.0 | 0.001 |
| 07 | 0.984 | 0.002 | 0.006 | 0.008 |
| 08 | 0.11 | 0.027 | 0.862 | 0.001 |
| 09 | 0.048 | 0.232 | 0.03 | 0.689 |
| 10 | 0.167 | 0.097 | 0.616 | 0.12 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.579 | -0.177 | 0.123 | -1.396 |
| 02 | -1.033 | 1.077 | -0.414 | -3.057 |
| 03 | -0.7 | 1.225 | -3.057 | -2.975 |
| 04 | -2.975 | -4.203 | 1.355 | -2.829 |
| 05 | -2.975 | -2.829 | 1.355 | -4.203 |
| 06 | 1.378 | -4.203 | -4.973 | -4.516 |
| 07 | 1.365 | -4.203 | -3.474 | -3.244 |
| 08 | -0.811 | -2.161 | 1.232 | -4.516 |
| 09 | -1.612 | -0.073 | -2.061 | 1.009 |
| 10 | -0.402 | -0.936 | 0.898 | -0.725 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.85966 |
| 0.0005 | 4.990905 |
| 0.0001 | 7.288155 |