MotifETV1.H12CORE.1.PM.A
Gene (human)ETV1
(GeneCards)
Gene synonyms (human)ER81
Gene (mouse)Etv1
Gene synonyms (mouse)Er81, Etsrp81
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
A
Motif length13
ConsensusndRMAGGAAGYdn
GC content53.79%
Information content (bits; total / per base)13.194 / 1.015
Data sourcesChIP-Seq + Methyl-HT-SELEX
Aligned words8683

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 8 (55) 0.857 0.895 0.721 0.802 0.858 0.89 2.857 3.188 148.538 256.125

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 8 experiments median 0.984 0.971 0.961 0.946 0.823 0.837
best 0.995 0.991 0.984 0.977 0.966 0.951
Methyl HT-SELEX, 3 experiments median 0.951 0.928 0.862 0.839 0.724 0.728
best 0.991 0.986 0.983 0.973 0.964 0.95
Non-Methyl HT-SELEX, 5 experiments median 0.99 0.981 0.971 0.95 0.863 0.872
best 0.995 0.991 0.984 0.977 0.966 0.951

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 10.929 3.461 0.245 0.204

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.968 0.829 0.919 0.565
batch 2 0.73 0.419 0.753 0.532
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classTryptophan cluster factors {3.5} (TFClass)
TF familyEts-related {3.5.2} (TFClass)
TF subfamilyELK-like {3.5.2.2} (TFClass)
TFClass IDTFClass: 3.5.2.2.4
HGNCHGNC:3490
MGIMGI:99254
EntrezGene (human)GeneID:2115
(SSTAR profile)
EntrezGene (mouse)GeneID:14009
(SSTAR profile)
UniProt ID (human)ETV1_HUMAN
UniProt ID (mouse)ETV1_MOUSE
UniProt AC (human)P50549
(TFClass)
UniProt AC (mouse)P41164
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 8 human, 0 mouse
HT-SELEX 5
Methyl-HT-SELEX 3
PCM
ACGT
012836.01908.02443.01496.0
021956.51110.54166.51449.5
033550.0127.04296.0710.0
041862.05607.01120.094.0
056288.02353.041.01.0
060.00.08683.00.0
070.00.08683.00.0
088683.00.00.00.0
097756.00.00.0927.0
10120.06.08557.00.0
1148.01361.01204.06070.0
123516.75482.753802.75880.75
132241.751922.752847.751670.75
PFM
ACGT
010.3270.220.2810.172
020.2250.1280.480.167
030.4090.0150.4950.082
040.2140.6460.1290.011
050.7240.2710.0050.0
060.00.01.00.0
070.00.01.00.0
081.00.00.00.0
090.8930.00.00.107
100.0140.0010.9850.0
110.0060.1570.1390.699
120.4050.0560.4380.101
130.2580.2210.3280.192
PWM
ACGT
010.267-0.1290.118-0.372
02-0.104-0.6690.652-0.403
030.491-2.8220.682-1.115
04-0.1530.948-0.661-3.117
051.0630.081-3.916-6.5
06-6.865-6.8651.386-6.865
07-6.865-6.8651.386-6.865
081.386-6.865-6.865-6.865
091.273-6.865-6.865-0.849
10-2.878-5.5721.371-6.865
11-3.767-0.466-0.5891.028
120.482-1.50.56-0.901
130.032-0.1210.271-0.261
Standard thresholds
P-value Threshold
0.001 2.11356
0.0005 4.03121
0.0001 7.35067