| Motif | ESR2.H12INVIVO.1.P.B |
| Gene (human) | ESR2 (GeneCards) |
| Gene synonyms (human) | ESTRB, NR3A2 |
| Gene (mouse) | Esr2 |
| Gene synonyms (mouse) | Estrb, Nr3a2 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | B |
| Motif | ESR2.H12INVIVO.1.P.B |
| Gene (human) | ESR2 (GeneCards) |
| Gene synonyms (human) | ESTRB, NR3A2 |
| Gene (mouse) | Esr2 |
| Gene synonyms (mouse) | Estrb, Nr3a2 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | B |
| Motif length | 7 |
| Consensus | RGGTCAb |
| GC content | 59.11% |
| Information content (bits; total / per base) | 9.419 / 1.346 |
| Data sources | ChIP-Seq |
| Aligned words | 1009 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 6 (42) | 0.834 | 0.877 | 0.698 | 0.767 | 0.785 | 0.826 | 1.965 | 2.14 | 164.821 | 239.201 |
| Mouse | 3 (19) | 0.642 | 0.867 | 0.507 | 0.738 | 0.576 | 0.817 | 1.239 | 2.093 | 27.398 | 91.886 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 2.317 | 2.252 | 0.172 | 0.12 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | Nuclear receptors with C4 zinc fingers {2.1} (TFClass) |
| TF family | Steroid hormone receptors {2.1.1} (TFClass) |
| TF subfamily | ER-like (NR3A) {2.1.1.2} (TFClass) |
| TFClass ID | TFClass: 2.1.1.2.2 |
| HGNC | HGNC:3468 |
| MGI | MGI:109392 |
| EntrezGene (human) | GeneID:2100 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:13983 (SSTAR profile) |
| UniProt ID (human) | ESR2_HUMAN |
| UniProt ID (mouse) | ESR2_MOUSE |
| UniProt AC (human) | Q92731 (TFClass) |
| UniProt AC (mouse) | O08537 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 6 human, 3 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | ESR2.H12INVIVO.1.P.B.pcm |
| PWM | ESR2.H12INVIVO.1.P.B.pwm |
| PFM | ESR2.H12INVIVO.1.P.B.pfm |
| Alignment | ESR2.H12INVIVO.1.P.B.words.tsv |
| Threshold to P-value map | ESR2.H12INVIVO.1.P.B.thr |
| Motif in other formats | |
| JASPAR format | ESR2.H12INVIVO.1.P.B_jaspar_format.txt |
| MEME format | ESR2.H12INVIVO.1.P.B_meme_format.meme |
| Transfac format | ESR2.H12INVIVO.1.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 679.0 | 39.0 | 276.0 | 15.0 |
| 02 | 20.0 | 1.0 | 935.0 | 53.0 |
| 03 | 7.0 | 15.0 | 978.0 | 9.0 |
| 04 | 16.0 | 6.0 | 65.0 | 922.0 |
| 05 | 6.0 | 990.0 | 4.0 | 9.0 |
| 06 | 951.0 | 2.0 | 54.0 | 2.0 |
| 07 | 84.0 | 457.0 | 353.0 | 115.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.673 | 0.039 | 0.274 | 0.015 |
| 02 | 0.02 | 0.001 | 0.927 | 0.053 |
| 03 | 0.007 | 0.015 | 0.969 | 0.009 |
| 04 | 0.016 | 0.006 | 0.064 | 0.914 |
| 05 | 0.006 | 0.981 | 0.004 | 0.009 |
| 06 | 0.943 | 0.002 | 0.054 | 0.002 |
| 07 | 0.083 | 0.453 | 0.35 | 0.114 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.986 | -1.83 | 0.089 | -2.72 |
| 02 | -2.459 | -4.533 | 1.305 | -1.535 |
| 03 | -3.371 | -2.72 | 1.35 | -3.164 |
| 04 | -2.662 | -3.492 | -1.337 | 1.291 |
| 05 | -3.492 | 1.362 | -3.792 | -3.164 |
| 06 | 1.322 | -4.221 | -1.517 | -4.221 |
| 07 | -1.086 | 0.591 | 0.334 | -0.777 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.623345 |
| 0.0005 | 5.49817 |
| 0.0001 | 7.67608 |