| Motif | ESR2.H12INVITRO.1.P.D |
| Gene (human) | ESR2 (GeneCards) |
| Gene synonyms (human) | ESTRB, NR3A2 |
| Gene (mouse) | Esr2 |
| Gene synonyms (mouse) | Estrb, Nr3a2 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | ESR2.H12INVITRO.1.P.D |
| Gene (human) | ESR2 (GeneCards) |
| Gene synonyms (human) | ESTRB, NR3A2 |
| Gene (mouse) | Esr2 |
| Gene synonyms (mouse) | Estrb, Nr3a2 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 7 |
| Consensus | RGGTCAb |
| GC content | 60.05% |
| Information content (bits; total / per base) | 9.645 / 1.378 |
| Data sources | ChIP-Seq |
| Aligned words | 1021 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 6 (42) | 0.834 | 0.876 | 0.697 | 0.765 | 0.779 | 0.824 | 1.963 | 2.136 | 162.677 | 236.523 |
| Mouse | 3 (19) | 0.65 | 0.866 | 0.505 | 0.737 | 0.579 | 0.817 | 1.243 | 2.092 | 30.959 | 91.469 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 2.722 | 3.041 | 0.176 | 0.125 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | Nuclear receptors with C4 zinc fingers {2.1} (TFClass) |
| TF family | Steroid hormone receptors {2.1.1} (TFClass) |
| TF subfamily | ER-like (NR3A) {2.1.1.2} (TFClass) |
| TFClass ID | TFClass: 2.1.1.2.2 |
| HGNC | HGNC:3468 |
| MGI | MGI:109392 |
| EntrezGene (human) | GeneID:2100 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:13983 (SSTAR profile) |
| UniProt ID (human) | ESR2_HUMAN |
| UniProt ID (mouse) | ESR2_MOUSE |
| UniProt AC (human) | Q92731 (TFClass) |
| UniProt AC (mouse) | O08537 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 6 human, 3 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | ESR2.H12INVITRO.1.P.D.pcm |
| PWM | ESR2.H12INVITRO.1.P.D.pwm |
| PFM | ESR2.H12INVITRO.1.P.D.pfm |
| Alignment | ESR2.H12INVITRO.1.P.D.words.tsv |
| Threshold to P-value map | ESR2.H12INVITRO.1.P.D.thr |
| Motif in other formats | |
| JASPAR format | ESR2.H12INVITRO.1.P.D_jaspar_format.txt |
| MEME format | ESR2.H12INVITRO.1.P.D_meme_format.meme |
| Transfac format | ESR2.H12INVITRO.1.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 676.0 | 53.0 | 288.0 | 4.0 |
| 02 | 25.0 | 1.0 | 972.0 | 23.0 |
| 03 | 7.0 | 10.0 | 1002.0 | 2.0 |
| 04 | 17.0 | 8.0 | 73.0 | 923.0 |
| 05 | 3.0 | 1005.0 | 2.0 | 11.0 |
| 06 | 967.0 | 1.0 | 51.0 | 2.0 |
| 07 | 89.0 | 465.0 | 361.0 | 106.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.662 | 0.052 | 0.282 | 0.004 |
| 02 | 0.024 | 0.001 | 0.952 | 0.023 |
| 03 | 0.007 | 0.01 | 0.981 | 0.002 |
| 04 | 0.017 | 0.008 | 0.071 | 0.904 |
| 05 | 0.003 | 0.984 | 0.002 | 0.011 |
| 06 | 0.947 | 0.001 | 0.05 | 0.002 |
| 07 | 0.087 | 0.455 | 0.354 | 0.104 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.97 | -1.547 | 0.12 | -3.803 |
| 02 | -2.263 | -4.544 | 1.332 | -2.341 |
| 03 | -3.382 | -3.087 | 1.362 | -4.232 |
| 04 | -2.619 | -3.274 | -1.235 | 1.28 |
| 05 | -3.995 | 1.365 | -4.232 | -3.005 |
| 06 | 1.327 | -4.544 | -1.584 | -4.232 |
| 07 | -1.041 | 0.597 | 0.345 | -0.869 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.59294 |
| 0.0005 | 5.719835 |
| 0.0001 | 7.72584 |