Motif | ERR1.H12CORE.0.PSM.A |
Gene (human) | ESRRA (GeneCards) |
Gene synonyms (human) | ERR1, ESRL1, NR3B1 |
Gene (mouse) | Esrra |
Gene synonyms (mouse) | Err1, Estrra, Nr3b1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | A |
Motif | ERR1.H12CORE.0.PSM.A |
Gene (human) | ESRRA (GeneCards) |
Gene synonyms (human) | ERR1, ESRL1, NR3B1 |
Gene (mouse) | Esrra |
Gene synonyms (mouse) | Err1, Estrra, Nr3b1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | A |
Motif length | 11 |
Consensus | nbSAAGGTCAn |
GC content | 49.37% |
Information content (bits; total / per base) | 12.267 / 1.115 |
Data sources | ChIP-Seq + HT-SELEX + Methyl-HT-SELEX |
Aligned words | 9916 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 15 (99) | 0.904 | 0.966 | 0.844 | 0.943 | 0.894 | 0.95 | 3.841 | 4.461 | 221.921 | 352.252 |
Mouse | 5 (32) | 0.902 | 0.972 | 0.796 | 0.939 | 0.893 | 0.973 | 3.598 | 5.256 | 201.386 | 341.509 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 8 experiments | median | 0.976 | 0.971 | 0.817 | 0.828 | 0.669 | 0.7 |
best | 0.999 | 0.999 | 0.999 | 0.998 | 0.996 | 0.995 | |
Methyl HT-SELEX, 2 experiments | median | 0.997 | 0.995 | 0.989 | 0.985 | 0.926 | 0.929 |
best | 0.999 | 0.999 | 0.999 | 0.998 | 0.996 | 0.995 | |
Non-Methyl HT-SELEX, 6 experiments | median | 0.956 | 0.952 | 0.748 | 0.771 | 0.621 | 0.658 |
best | 0.998 | 0.997 | 0.997 | 0.995 | 0.989 | 0.985 |
rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
---|---|---|---|---|
# | 2.027 | 0.863 | 0.188 | 0.085 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | Nuclear receptors with C4 zinc fingers {2.1} (TFClass) |
TF family | Steroid hormone receptors {2.1.1} (TFClass) |
TF subfamily | ER-like (NR3A) {2.1.1.2} (TFClass) |
TFClass ID | TFClass: 2.1.1.2.3 |
HGNC | HGNC:3471 |
MGI | MGI:1346831 |
EntrezGene (human) | GeneID:2101 (SSTAR profile) |
EntrezGene (mouse) | GeneID:26379 (SSTAR profile) |
UniProt ID (human) | ERR1_HUMAN |
UniProt ID (mouse) | ERR1_MOUSE |
UniProt AC (human) | P11474 (TFClass) |
UniProt AC (mouse) | O08580 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 15 human, 5 mouse |
HT-SELEX | 6 |
Methyl-HT-SELEX | 2 |
PCM | ERR1.H12CORE.0.PSM.A.pcm |
PWM | ERR1.H12CORE.0.PSM.A.pwm |
PFM | ERR1.H12CORE.0.PSM.A.pfm |
Alignment | ERR1.H12CORE.0.PSM.A.words.tsv |
Threshold to P-value map | ERR1.H12CORE.0.PSM.A.thr |
Motif in other formats | |
JASPAR format | ERR1.H12CORE.0.PSM.A_jaspar_format.txt |
MEME format | ERR1.H12CORE.0.PSM.A_meme_format.meme |
Transfac format | ERR1.H12CORE.0.PSM.A_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1866.25 | 2355.25 | 3094.25 | 2600.25 |
02 | 1181.25 | 2271.25 | 1702.25 | 4761.25 |
03 | 1019.0 | 6049.0 | 2265.0 | 583.0 |
04 | 9008.0 | 20.0 | 711.0 | 177.0 |
05 | 9881.0 | 5.0 | 26.0 | 4.0 |
06 | 0.0 | 0.0 | 9909.0 | 7.0 |
07 | 1.0 | 0.0 | 9915.0 | 0.0 |
08 | 203.0 | 10.0 | 480.0 | 9223.0 |
09 | 78.0 | 8685.0 | 531.0 | 622.0 |
10 | 8050.25 | 143.25 | 1609.25 | 113.25 |
11 | 2469.5 | 2762.5 | 1303.5 | 3380.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.188 | 0.238 | 0.312 | 0.262 |
02 | 0.119 | 0.229 | 0.172 | 0.48 |
03 | 0.103 | 0.61 | 0.228 | 0.059 |
04 | 0.908 | 0.002 | 0.072 | 0.018 |
05 | 0.996 | 0.001 | 0.003 | 0.0 |
06 | 0.0 | 0.0 | 0.999 | 0.001 |
07 | 0.0 | 0.0 | 1.0 | 0.0 |
08 | 0.02 | 0.001 | 0.048 | 0.93 |
09 | 0.008 | 0.876 | 0.054 | 0.063 |
10 | 0.812 | 0.014 | 0.162 | 0.011 |
11 | 0.249 | 0.279 | 0.131 | 0.341 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.284 | -0.051 | 0.222 | 0.048 |
02 | -0.74 | -0.087 | -0.375 | 0.652 |
03 | -0.888 | 0.891 | -0.09 | -1.444 |
04 | 1.29 | -4.712 | -1.247 | -2.627 |
05 | 1.382 | -5.829 | -4.474 | -5.976 |
06 | -6.983 | -6.983 | 1.385 | -5.586 |
07 | -6.622 | -6.983 | 1.385 | -6.983 |
08 | -2.492 | -5.307 | -1.638 | 1.313 |
09 | -3.431 | 1.253 | -1.537 | -1.38 |
10 | 1.177 | -2.836 | -0.432 | -3.067 |
11 | -0.004 | 0.108 | -0.642 | 0.31 |
P-value | Threshold |
---|---|
0.001 | 3.65376 |
0.0005 | 4.97259 |
0.0001 | 7.36307 |