ERF.H12RSNP.0.PS.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ERF.H12RSNP.0.PS.D
Gene (human)	ERF (GeneCards)
Gene synonyms (human)
Gene (mouse)	Erf
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	11
Consensus	ddvAGGAARYd
GC content	44.84%
Information content (bits; total / per base)	9.835 / 0.894
Data sources	ChIP-Seq + HT-SELEX
Aligned words	1001

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (25)	0.695	0.799	0.531	0.664	0.747	0.83	2.136	2.675	47.824	114.06
Mouse	7 (41)	0.706	0.8	0.567	0.663	0.762	0.843	2.328	2.81	30.745	76.699

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.575	0.551	0.542	0.532	0.523	0.521
Non-Methyl HT-SELEX, 2 experiments	best	0.585	0.559	0.548	0.537	0.526	0.523

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Tryptophan cluster factors {3.5} (TFClass)
TF family	Ets-related {3.5.2} (TFClass)
TF subfamily	ETS-like {3.5.2.1} (TFClass)
TFClass ID	TFClass: 3.5.2.1.11
HGNC	HGNC:3444
MGI	MGI:109637
EntrezGene (human)	GeneID:2077 (SSTAR profile)
EntrezGene (mouse)	GeneID:13875 (SSTAR profile)
UniProt ID (human)	ERF_HUMAN
UniProt ID (mouse)	ERF_MOUSE
UniProt AC (human)	P50548 (TFClass)
UniProt AC (mouse)	P70459 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 7 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	ERF.H12RSNP.0.PS.D.pcm
PWM	ERF.H12RSNP.0.PS.D.pwm
PFM	ERF.H12RSNP.0.PS.D.pfm
Alignment	ERF.H12RSNP.0.PS.D.words.tsv
Threshold to P-value map	ERF.H12RSNP.0.PS.D.thr
Motif in other formats
JASPAR format	ERF.H12RSNP.0.PS.D_jaspar_format.txt
MEME format	ERF.H12RSNP.0.PS.D_meme_format.meme
Transfac format	ERF.H12RSNP.0.PS.D_transfac_format.txt
Homer format	ERF.H12RSNP.0.PS.D_homer_format_0.001.txt ERF.H12RSNP.0.PS.D_homer_format_0.0005.txt ERF.H12RSNP.0.PS.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	445.0	127.0	272.0	157.0
02	487.0	115.0	199.0	200.0
03	289.0	343.0	278.0	91.0
04	805.0	121.0	44.0	31.0
05	10.0	0.0	983.0	8.0
06	3.0	16.0	979.0	3.0
07	976.0	10.0	12.0	3.0
08	902.0	8.0	21.0	70.0
09	396.0	40.0	563.0	2.0
10	90.0	235.0	72.0	604.0
11	333.0	130.0	369.0	169.0

PFM

	A	C	G	T
01	0.445	0.127	0.272	0.157
02	0.487	0.115	0.199	0.2
03	0.289	0.343	0.278	0.091
04	0.804	0.121	0.044	0.031
05	0.01	0.0	0.982	0.008
06	0.003	0.016	0.978	0.003
07	0.975	0.01	0.012	0.003
08	0.901	0.008	0.021	0.07
09	0.396	0.04	0.562	0.002
10	0.09	0.235	0.072	0.603
11	0.333	0.13	0.369	0.169

PWM

	A	C	G	T
01	0.573	-0.672	0.083	-0.462
02	0.662	-0.769	-0.227	-0.222
03	0.143	0.313	0.104	-1.0
04	1.164	-0.719	-1.707	-2.041
05	-3.067	-4.983	1.363	-3.254
06	-3.976	-2.654	1.359	-3.976
07	1.356	-3.067	-2.91	-3.976
08	1.277	-3.254	-2.406	-1.256
09	0.456	-1.798	0.807	-4.214
10	-1.011	-0.062	-1.229	0.877
11	0.284	-0.649	0.386	-0.389

Standard thresholds

P-value	Threshold
0.001	4.811915
0.0005	5.742595
0.0001	7.50567