| Motif | ERF.H12INVITRO.0.PS.A |
| Gene (human) | ERF (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Erf |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | ERF.H12INVITRO.0.PS.A |
| Gene (human) | ERF (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Erf |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 11 |
| Consensus | ddnSGGAAGbn |
| GC content | 56.55% |
| Information content (bits; total / per base) | 9.879 / 0.898 |
| Data sources | ChIP-Seq + HT-SELEX |
| Aligned words | 1638 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 4 (25) | 0.679 | 0.73 | 0.515 | 0.555 | 0.643 | 0.721 | 1.532 | 2.253 | 29.538 | 64.62 |
| Mouse | 7 (41) | 0.701 | 0.77 | 0.552 | 0.625 | 0.686 | 0.73 | 1.737 | 2.239 | 25.125 | 52.301 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.608 | 0.581 | 0.548 | 0.545 | 0.521 | 0.526 |
| best | 0.619 | 0.591 | 0.554 | 0.551 | 0.524 | 0.529 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Tryptophan cluster factors {3.5} (TFClass) |
| TF family | Ets-related {3.5.2} (TFClass) |
| TF subfamily | ETS-like {3.5.2.1} (TFClass) |
| TFClass ID | TFClass: 3.5.2.1.11 |
| HGNC | HGNC:3444 |
| MGI | MGI:109637 |
| EntrezGene (human) | GeneID:2077 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:13875 (SSTAR profile) |
| UniProt ID (human) | ERF_HUMAN |
| UniProt ID (mouse) | ERF_MOUSE |
| UniProt AC (human) | P50548 (TFClass) |
| UniProt AC (mouse) | P70459 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 4 human, 7 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| PCM | ERF.H12INVITRO.0.PS.A.pcm |
| PWM | ERF.H12INVITRO.0.PS.A.pwm |
| PFM | ERF.H12INVITRO.0.PS.A.pfm |
| Alignment | ERF.H12INVITRO.0.PS.A.words.tsv |
| Threshold to P-value map | ERF.H12INVITRO.0.PS.A.thr |
| Motif in other formats | |
| JASPAR format | ERF.H12INVITRO.0.PS.A_jaspar_format.txt |
| MEME format | ERF.H12INVITRO.0.PS.A_meme_format.meme |
| Transfac format | ERF.H12INVITRO.0.PS.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 371.75 | 268.75 | 662.75 | 334.75 |
| 02 | 589.5 | 92.5 | 495.5 | 460.5 |
| 03 | 331.0 | 505.0 | 486.0 | 316.0 |
| 04 | 177.0 | 941.0 | 504.0 | 16.0 |
| 05 | 0.0 | 0.0 | 1638.0 | 0.0 |
| 06 | 0.0 | 0.0 | 1638.0 | 0.0 |
| 07 | 1638.0 | 0.0 | 0.0 | 0.0 |
| 08 | 1449.0 | 0.0 | 2.0 | 187.0 |
| 09 | 469.0 | 17.0 | 1151.0 | 1.0 |
| 10 | 29.5 | 469.5 | 433.5 | 705.5 |
| 11 | 434.25 | 262.25 | 623.25 | 318.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.227 | 0.164 | 0.405 | 0.204 |
| 02 | 0.36 | 0.056 | 0.303 | 0.281 |
| 03 | 0.202 | 0.308 | 0.297 | 0.193 |
| 04 | 0.108 | 0.574 | 0.308 | 0.01 |
| 05 | 0.0 | 0.0 | 1.0 | 0.0 |
| 06 | 0.0 | 0.0 | 1.0 | 0.0 |
| 07 | 1.0 | 0.0 | 0.0 | 0.0 |
| 08 | 0.885 | 0.0 | 0.001 | 0.114 |
| 09 | 0.286 | 0.01 | 0.703 | 0.001 |
| 10 | 0.018 | 0.287 | 0.265 | 0.431 |
| 11 | 0.265 | 0.16 | 0.38 | 0.194 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.096 | -0.419 | 0.48 | -0.201 |
| 02 | 0.363 | -1.472 | 0.19 | 0.117 |
| 03 | -0.212 | 0.209 | 0.171 | -0.258 |
| 04 | -0.833 | 0.829 | 0.207 | -3.137 |
| 05 | -5.404 | -5.404 | 1.383 | -5.404 |
| 06 | -5.404 | -5.404 | 1.383 | -5.404 |
| 07 | 1.383 | -5.404 | -5.404 | -5.404 |
| 08 | 1.26 | -5.404 | -4.671 | -0.778 |
| 09 | 0.135 | -3.083 | 1.031 | -4.972 |
| 10 | -2.574 | 0.136 | 0.057 | 0.542 |
| 11 | 0.058 | -0.443 | 0.418 | -0.251 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.196115 |
| 0.0005 | 6.234145 |
| 0.0001 | 7.5803 |