MotifERF.H12CORE.0.PS.A
Gene (human)ERF
(GeneCards)
Gene synonyms (human)
Gene (mouse)Erf
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length11
ConsensusddvAGGAARYd
GC content44.84%
Information content (bits; total / per base)9.835 / 0.894
Data sourcesChIP-Seq + HT-SELEX
Aligned words1001

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 4 (25) 0.695 0.799 0.531 0.664 0.747 0.83 2.136 2.675 47.824 114.06
Mouse 7 (41) 0.706 0.8 0.567 0.663 0.762 0.843 2.328 2.81 30.745 76.699

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.575 0.551 0.542 0.532 0.523 0.521
best 0.585 0.559 0.548 0.537 0.526 0.523
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classTryptophan cluster factors {3.5} (TFClass)
TF familyEts-related {3.5.2} (TFClass)
TF subfamilyETS-like {3.5.2.1} (TFClass)
TFClass IDTFClass: 3.5.2.1.11
HGNCHGNC:3444
MGIMGI:109637
EntrezGene (human)GeneID:2077
(SSTAR profile)
EntrezGene (mouse)GeneID:13875
(SSTAR profile)
UniProt ID (human)ERF_HUMAN
UniProt ID (mouse)ERF_MOUSE
UniProt AC (human)P50548
(TFClass)
UniProt AC (mouse)P70459
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 4 human, 7 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
01445.0127.0272.0157.0
02487.0115.0199.0200.0
03289.0343.0278.091.0
04805.0121.044.031.0
0510.00.0983.08.0
063.016.0979.03.0
07976.010.012.03.0
08902.08.021.070.0
09396.040.0563.02.0
1090.0235.072.0604.0
11333.0130.0369.0169.0
PFM
ACGT
010.4450.1270.2720.157
020.4870.1150.1990.2
030.2890.3430.2780.091
040.8040.1210.0440.031
050.010.00.9820.008
060.0030.0160.9780.003
070.9750.010.0120.003
080.9010.0080.0210.07
090.3960.040.5620.002
100.090.2350.0720.603
110.3330.130.3690.169
PWM
ACGT
010.573-0.6720.083-0.462
020.662-0.769-0.227-0.222
030.1430.3130.104-1.0
041.164-0.719-1.707-2.041
05-3.067-4.9831.363-3.254
06-3.976-2.6541.359-3.976
071.356-3.067-2.91-3.976
081.277-3.254-2.406-1.256
090.456-1.7980.807-4.214
10-1.011-0.062-1.2290.877
110.284-0.6490.386-0.389
Standard thresholds
P-value Threshold
0.001 4.811915
0.0005 5.742595
0.0001 7.50567