MotifEMX2.H12INVIVO.0.S.D
Gene (human)EMX2
(GeneCards)
Gene synonyms (human)
Gene (mouse)Emx2
Gene synonyms (mouse)Emx-2
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length13
ConsensusnvbTAATTAGbbn
GC content37.35%
Information content (bits; total / per base)12.96 / 0.997
Data sourcesHT-SELEX
Aligned words8867

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 3 experiments median 0.969 0.952 0.927 0.903 0.806 0.8
best 0.993 0.988 0.989 0.981 0.979 0.968
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyEMX {3.1.2.6} (TFClass)
TFClass IDTFClass: 3.1.2.6.2
HGNCHGNC:3341
MGIMGI:95388
EntrezGene (human)GeneID:2018
(SSTAR profile)
EntrezGene (mouse)GeneID:13797
(SSTAR profile)
UniProt ID (human)EMX2_HUMAN
UniProt ID (mouse)EMX2_MOUSE
UniProt AC (human)Q04743
(TFClass)
UniProt AC (mouse)Q04744
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 0
PCM
ACGT
012275.01956.02858.01778.0
021339.52854.53534.51138.5
03618.02801.04144.01304.0
0417.0782.01.08067.0
057273.01586.08.00.0
068867.00.00.00.0
070.00.00.08867.0
080.00.00.08867.0
098867.00.00.00.0
101291.0366.07210.00.0
11252.03584.02051.02980.0
12996.251668.253687.252515.25
132733.752072.751885.752174.75
PFM
ACGT
010.2570.2210.3220.201
020.1510.3220.3990.128
030.070.3160.4670.147
040.0020.0880.00.91
050.820.1790.0010.0
061.00.00.00.0
070.00.00.01.0
080.00.00.01.0
091.00.00.00.0
100.1460.0410.8130.0
110.0280.4040.2310.336
120.1120.1880.4160.284
130.3080.2340.2130.245
PWM
ACGT
010.026-0.1250.254-0.22
02-0.5030.2530.466-0.665
03-1.2750.2340.625-0.53
04-4.746-1.04-6.5191.291
051.187-0.334-5.375-6.884
061.386-6.884-6.884-6.884
07-6.884-6.884-6.8841.386
08-6.884-6.884-6.8841.386
091.386-6.884-6.884-6.884
10-0.54-1.7961.179-6.884
11-2.1660.48-0.0780.296
12-0.799-0.2840.5080.126
130.209-0.067-0.162-0.019
Standard thresholds
P-value Threshold
0.001 1.48981
0.0005 3.82746
0.0001 7.505875