| Motif | EMX2.H12INVIVO.0.S.D |
| Gene (human) | EMX2 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Emx2 |
| Gene synonyms (mouse) | Emx-2 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | EMX2.H12INVIVO.0.S.D |
| Gene (human) | EMX2 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Emx2 |
| Gene synonyms (mouse) | Emx-2 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 13 |
| Consensus | nvbTAATTAGbbn |
| GC content | 37.35% |
| Information content (bits; total / per base) | 12.96 / 0.997 |
| Data sources | HT-SELEX |
| Aligned words | 8867 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 3 experiments | median | 0.969 | 0.952 | 0.927 | 0.903 | 0.806 | 0.8 |
| best | 0.993 | 0.988 | 0.989 | 0.981 | 0.979 | 0.968 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | NK-related {3.1.2} (TFClass) |
| TF subfamily | EMX {3.1.2.6} (TFClass) |
| TFClass ID | TFClass: 3.1.2.6.2 |
| HGNC | HGNC:3341 |
| MGI | MGI:95388 |
| EntrezGene (human) | GeneID:2018 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:13797 (SSTAR profile) |
| UniProt ID (human) | EMX2_HUMAN |
| UniProt ID (mouse) | EMX2_MOUSE |
| UniProt AC (human) | Q04743 (TFClass) |
| UniProt AC (mouse) | Q04744 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 3 |
| Methyl-HT-SELEX | 0 |
| PCM | EMX2.H12INVIVO.0.S.D.pcm |
| PWM | EMX2.H12INVIVO.0.S.D.pwm |
| PFM | EMX2.H12INVIVO.0.S.D.pfm |
| Alignment | EMX2.H12INVIVO.0.S.D.words.tsv |
| Threshold to P-value map | EMX2.H12INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | EMX2.H12INVIVO.0.S.D_jaspar_format.txt |
| MEME format | EMX2.H12INVIVO.0.S.D_meme_format.meme |
| Transfac format | EMX2.H12INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2275.0 | 1956.0 | 2858.0 | 1778.0 |
| 02 | 1339.5 | 2854.5 | 3534.5 | 1138.5 |
| 03 | 618.0 | 2801.0 | 4144.0 | 1304.0 |
| 04 | 17.0 | 782.0 | 1.0 | 8067.0 |
| 05 | 7273.0 | 1586.0 | 8.0 | 0.0 |
| 06 | 8867.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 8867.0 |
| 08 | 0.0 | 0.0 | 0.0 | 8867.0 |
| 09 | 8867.0 | 0.0 | 0.0 | 0.0 |
| 10 | 1291.0 | 366.0 | 7210.0 | 0.0 |
| 11 | 252.0 | 3584.0 | 2051.0 | 2980.0 |
| 12 | 996.25 | 1668.25 | 3687.25 | 2515.25 |
| 13 | 2733.75 | 2072.75 | 1885.75 | 2174.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.257 | 0.221 | 0.322 | 0.201 |
| 02 | 0.151 | 0.322 | 0.399 | 0.128 |
| 03 | 0.07 | 0.316 | 0.467 | 0.147 |
| 04 | 0.002 | 0.088 | 0.0 | 0.91 |
| 05 | 0.82 | 0.179 | 0.001 | 0.0 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 1.0 |
| 08 | 0.0 | 0.0 | 0.0 | 1.0 |
| 09 | 1.0 | 0.0 | 0.0 | 0.0 |
| 10 | 0.146 | 0.041 | 0.813 | 0.0 |
| 11 | 0.028 | 0.404 | 0.231 | 0.336 |
| 12 | 0.112 | 0.188 | 0.416 | 0.284 |
| 13 | 0.308 | 0.234 | 0.213 | 0.245 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.026 | -0.125 | 0.254 | -0.22 |
| 02 | -0.503 | 0.253 | 0.466 | -0.665 |
| 03 | -1.275 | 0.234 | 0.625 | -0.53 |
| 04 | -4.746 | -1.04 | -6.519 | 1.291 |
| 05 | 1.187 | -0.334 | -5.375 | -6.884 |
| 06 | 1.386 | -6.884 | -6.884 | -6.884 |
| 07 | -6.884 | -6.884 | -6.884 | 1.386 |
| 08 | -6.884 | -6.884 | -6.884 | 1.386 |
| 09 | 1.386 | -6.884 | -6.884 | -6.884 |
| 10 | -0.54 | -1.796 | 1.179 | -6.884 |
| 11 | -2.166 | 0.48 | -0.078 | 0.296 |
| 12 | -0.799 | -0.284 | 0.508 | 0.126 |
| 13 | 0.209 | -0.067 | -0.162 | -0.019 |
| P-value | Threshold |
|---|---|
| 0.001 | 1.48981 |
| 0.0005 | 3.82746 |
| 0.0001 | 7.505875 |