MotifEMX1.H12INVITRO.0.SM.B
Gene (human)EMX1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Emx1
Gene synonyms (mouse)Emx-1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length13
ConsensusnnbTMATTARbnn
GC content36.4%
Information content (bits; total / per base)11.514 / 0.886
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9080

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.98 0.968 0.965 0.944 0.944 0.918
best 0.994 0.991 0.988 0.982 0.972 0.961
Methyl HT-SELEX, 2 experiments median 0.982 0.97 0.972 0.956 0.954 0.933
best 0.994 0.99 0.988 0.982 0.972 0.961
Non-Methyl HT-SELEX, 4 experiments median 0.98 0.968 0.948 0.931 0.858 0.854
best 0.994 0.991 0.988 0.982 0.966 0.956

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.977 0.803 0.928 0.491
batch 2 0.712 0.539 0.666 0.429
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyEMX {3.1.2.6} (TFClass)
TFClass IDTFClass: 3.1.2.6.1
HGNCHGNC:3340
MGIMGI:95387
EntrezGene (human)GeneID:2016
(SSTAR profile)
EntrezGene (mouse)GeneID:13796
(SSTAR profile)
UniProt ID (human)EMX1_HUMAN
UniProt ID (mouse)EMX1_MOUSE
UniProt AC (human)Q04741
(TFClass)
UniProt AC (mouse)Q04742
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 4
Methyl-HT-SELEX 2
PCM
ACGT
012384.751906.752632.752155.75
021588.02914.02864.01714.0
031196.02972.03625.01287.0
04165.01352.033.07530.0
055493.03478.096.013.0
069080.00.00.00.0
070.00.00.09080.0
080.00.00.09080.0
099080.00.00.00.0
102706.0549.05741.084.0
11417.03558.01921.03184.0
121516.51804.53524.52234.5
132681.252215.251778.252405.25
PFM
ACGT
010.2630.210.290.237
020.1750.3210.3150.189
030.1320.3270.3990.142
040.0180.1490.0040.829
050.6050.3830.0110.001
061.00.00.00.0
070.00.00.01.0
080.00.00.01.0
091.00.00.00.0
100.2980.060.6320.009
110.0460.3920.2120.351
120.1670.1990.3880.246
130.2950.2440.1960.265
PWM
ACGT
010.049-0.1740.148-0.052
02-0.3570.250.232-0.281
03-0.640.2690.468-0.567
04-2.609-0.518-4.1651.198
050.8830.426-3.141-5.002
061.386-6.905-6.905-6.905
07-6.905-6.905-6.9051.386
08-6.905-6.905-6.9051.386
091.386-6.905-6.905-6.905
100.176-1.4160.927-3.271
11-1.690.449-0.1670.338
12-0.403-0.2290.44-0.016
130.166-0.024-0.2440.058
Standard thresholds
P-value Threshold
0.001 3.54116
0.0005 5.323965
0.0001 7.88416