Motif | ELF5.H12RSNP.1.S.B |
Gene (human) | ELF5 (GeneCards) |
Gene synonyms (human) | ESE2 |
Gene (mouse) | Elf5 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | ELF5.H12RSNP.1.S.B |
Gene (human) | ELF5 (GeneCards) |
Gene synonyms (human) | ESE2 |
Gene (mouse) | Elf5 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 14 |
Consensus | vnAbSCGGAAGTdn |
GC content | 55.1% |
Information content (bits; total / per base) | 17.195 / 1.228 |
Data sources | HT-SELEX |
Aligned words | 5718 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 1 (6) | 0.795 | 0.797 | 0.74 | 0.743 | 0.862 | 0.882 | 3.402 | 3.501 | 217.481 | 223.319 |
Mouse | 8 (45) | 0.75 | 0.85 | 0.672 | 0.829 | 0.834 | 0.907 | 2.665 | 3.698 | 123.602 | 216.143 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 12 experiments | median | 0.986 | 0.974 | 0.92 | 0.908 | 0.792 | 0.79 |
best | 0.999 | 0.999 | 0.997 | 0.996 | 0.946 | 0.928 | |
Methyl HT-SELEX, 3 experiments | median | 0.987 | 0.973 | 0.972 | 0.956 | 0.935 | 0.915 |
best | 0.988 | 0.975 | 0.976 | 0.963 | 0.946 | 0.928 | |
Non-Methyl HT-SELEX, 9 experiments | median | 0.985 | 0.976 | 0.905 | 0.886 | 0.771 | 0.79 |
best | 0.999 | 0.999 | 0.997 | 0.996 | 0.936 | 0.928 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 1 | 0.791 | 0.379 | 0.754 | 0.437 |
batch 2 | 0.776 | 0.556 | 0.777 | 0.573 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Tryptophan cluster factors {3.5} (TFClass) |
TF family | Ets-related {3.5.2} (TFClass) |
TF subfamily | EHF-like {3.5.2.4} (TFClass) |
TFClass ID | TFClass: 3.5.2.4.3 |
HGNC | HGNC:3320 |
MGI | MGI:1335079 |
EntrezGene (human) | GeneID:2001 (SSTAR profile) |
EntrezGene (mouse) | GeneID:13711 (SSTAR profile) |
UniProt ID (human) | ELF5_HUMAN |
UniProt ID (mouse) | ELF5_MOUSE |
UniProt AC (human) | Q9UKW6 (TFClass) |
UniProt AC (mouse) | Q8VDK3 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 1 human, 8 mouse |
HT-SELEX | 9 |
Methyl-HT-SELEX | 3 |
PCM | ELF5.H12RSNP.1.S.B.pcm |
PWM | ELF5.H12RSNP.1.S.B.pwm |
PFM | ELF5.H12RSNP.1.S.B.pfm |
Alignment | ELF5.H12RSNP.1.S.B.words.tsv |
Threshold to P-value map | ELF5.H12RSNP.1.S.B.thr |
Motif in other formats | |
JASPAR format | ELF5.H12RSNP.1.S.B_jaspar_format.txt |
MEME format | ELF5.H12RSNP.1.S.B_meme_format.meme |
Transfac format | ELF5.H12RSNP.1.S.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 992.75 | 1523.75 | 2340.75 | 860.75 |
02 | 2170.25 | 934.25 | 1229.25 | 1384.25 |
03 | 5397.0 | 6.0 | 13.0 | 302.0 |
04 | 489.0 | 3380.0 | 774.0 | 1075.0 |
05 | 132.0 | 3450.0 | 2135.0 | 1.0 |
06 | 338.0 | 5380.0 | 0.0 | 0.0 |
07 | 0.0 | 0.0 | 5718.0 | 0.0 |
08 | 0.0 | 0.0 | 5718.0 | 0.0 |
09 | 5718.0 | 0.0 | 0.0 | 0.0 |
10 | 5718.0 | 0.0 | 0.0 | 0.0 |
11 | 0.0 | 0.0 | 5718.0 | 0.0 |
12 | 0.0 | 3.0 | 0.0 | 5715.0 |
13 | 2730.0 | 375.0 | 1802.0 | 811.0 |
14 | 1243.0 | 1857.0 | 1753.0 | 865.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.174 | 0.266 | 0.409 | 0.151 |
02 | 0.38 | 0.163 | 0.215 | 0.242 |
03 | 0.944 | 0.001 | 0.002 | 0.053 |
04 | 0.086 | 0.591 | 0.135 | 0.188 |
05 | 0.023 | 0.603 | 0.373 | 0.0 |
06 | 0.059 | 0.941 | 0.0 | 0.0 |
07 | 0.0 | 0.0 | 1.0 | 0.0 |
08 | 0.0 | 0.0 | 1.0 | 0.0 |
09 | 1.0 | 0.0 | 0.0 | 0.0 |
10 | 1.0 | 0.0 | 0.0 | 0.0 |
11 | 0.0 | 0.0 | 1.0 | 0.0 |
12 | 0.0 | 0.001 | 0.0 | 0.999 |
13 | 0.477 | 0.066 | 0.315 | 0.142 |
14 | 0.217 | 0.325 | 0.307 | 0.151 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.364 | 0.064 | 0.493 | -0.506 |
02 | 0.417 | -0.425 | -0.151 | -0.032 |
03 | 1.327 | -5.167 | -4.548 | -1.549 |
04 | -1.07 | 0.86 | -0.612 | -0.285 |
05 | -2.368 | 0.88 | 0.401 | -6.115 |
06 | -1.437 | 1.324 | -6.495 | -6.495 |
07 | -6.495 | -6.495 | 1.385 | -6.495 |
08 | -6.495 | -6.495 | 1.385 | -6.495 |
09 | 1.385 | -6.495 | -6.495 | -6.495 |
10 | 1.385 | -6.495 | -6.495 | -6.495 |
11 | -6.495 | -6.495 | 1.385 | -6.495 |
12 | -6.495 | -5.625 | -6.495 | 1.385 |
13 | 0.646 | -1.334 | 0.231 | -0.566 |
14 | -0.14 | 0.261 | 0.204 | -0.501 |
P-value | Threshold |
---|---|
0.001 | -2.76293 |
0.0005 | -0.29918 |
0.0001 | 3.77731 |