Motif | ELF4.H12RSNP.0.PS.A |
Gene (human) | ELF4 (GeneCards) |
Gene synonyms (human) | ELFR, MEF |
Gene (mouse) | Elf4 |
Gene synonyms (mouse) | Mef |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | A |
Motif | ELF4.H12RSNP.0.PS.A |
Gene (human) | ELF4 (GeneCards) |
Gene synonyms (human) | ELFR, MEF |
Gene (mouse) | Elf4 |
Gene synonyms (mouse) | Mef |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | A |
Motif length | 11 |
Consensus | dvSCGGAAGYR |
GC content | 60.64% |
Information content (bits; total / per base) | 13.331 / 1.212 |
Data sources | ChIP-Seq + HT-SELEX |
Aligned words | 997 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 3 (21) | 0.768 | 0.882 | 0.703 | 0.836 | 0.745 | 0.876 | 2.673 | 3.755 | 70.244 | 172.509 |
Mouse | 3 (19) | 0.969 | 0.979 | 0.925 | 0.954 | 0.961 | 0.972 | 4.491 | 4.688 | 242.432 | 369.699 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.997 | 0.994 | 0.995 | 0.991 | 0.988 | 0.982 |
best | 0.998 | 0.997 | 0.998 | 0.996 | 0.995 | 0.993 | |
Methyl HT-SELEX, 2 experiments | median | 0.996 | 0.993 | 0.994 | 0.99 | 0.985 | 0.978 |
best | 0.997 | 0.994 | 0.995 | 0.992 | 0.99 | 0.985 | |
Non-Methyl HT-SELEX, 2 experiments | median | 0.997 | 0.995 | 0.996 | 0.993 | 0.99 | 0.986 |
best | 0.998 | 0.997 | 0.998 | 0.996 | 0.995 | 0.993 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 2 | 0.914 | 0.762 | 0.908 | 0.709 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Tryptophan cluster factors {3.5} (TFClass) |
TF family | Ets-related {3.5.2} (TFClass) |
TF subfamily | ELF1-like {3.5.2.3} (TFClass) |
TFClass ID | TFClass: 3.5.2.3.3 |
HGNC | HGNC:3319 |
MGI | MGI:1928377 |
EntrezGene (human) | GeneID:2000 (SSTAR profile) |
EntrezGene (mouse) | GeneID:56501 (SSTAR profile) |
UniProt ID (human) | ELF4_HUMAN |
UniProt ID (mouse) | ELF4_MOUSE |
UniProt AC (human) | Q99607 (TFClass) |
UniProt AC (mouse) | Q9Z2U4 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 3 human, 3 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 2 |
PCM | ELF4.H12RSNP.0.PS.A.pcm |
PWM | ELF4.H12RSNP.0.PS.A.pwm |
PFM | ELF4.H12RSNP.0.PS.A.pfm |
Alignment | ELF4.H12RSNP.0.PS.A.words.tsv |
Threshold to P-value map | ELF4.H12RSNP.0.PS.A.thr |
Motif in other formats | |
JASPAR format | ELF4.H12RSNP.0.PS.A_jaspar_format.txt |
MEME format | ELF4.H12RSNP.0.PS.A_meme_format.meme |
Transfac format | ELF4.H12RSNP.0.PS.A_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 581.0 | 96.0 | 114.0 | 206.0 |
02 | 191.0 | 488.0 | 214.0 | 104.0 |
03 | 54.0 | 765.0 | 170.0 | 8.0 |
04 | 151.0 | 841.0 | 4.0 | 1.0 |
05 | 2.0 | 0.0 | 995.0 | 0.0 |
06 | 0.0 | 2.0 | 995.0 | 0.0 |
07 | 996.0 | 0.0 | 1.0 | 0.0 |
08 | 993.0 | 0.0 | 1.0 | 3.0 |
09 | 50.0 | 40.0 | 905.0 | 2.0 |
10 | 95.0 | 229.0 | 34.0 | 639.0 |
11 | 158.0 | 157.0 | 599.0 | 83.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.583 | 0.096 | 0.114 | 0.207 |
02 | 0.192 | 0.489 | 0.215 | 0.104 |
03 | 0.054 | 0.767 | 0.171 | 0.008 |
04 | 0.151 | 0.844 | 0.004 | 0.001 |
05 | 0.002 | 0.0 | 0.998 | 0.0 |
06 | 0.0 | 0.002 | 0.998 | 0.0 |
07 | 0.999 | 0.0 | 0.001 | 0.0 |
08 | 0.996 | 0.0 | 0.001 | 0.003 |
09 | 0.05 | 0.04 | 0.908 | 0.002 |
10 | 0.095 | 0.23 | 0.034 | 0.641 |
11 | 0.158 | 0.157 | 0.601 | 0.083 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.842 | -0.943 | -0.774 | -0.189 |
02 | -0.264 | 0.668 | -0.151 | -0.865 |
03 | -1.505 | 1.117 | -0.379 | -3.251 |
04 | -0.497 | 1.211 | -3.78 | -4.522 |
05 | -4.21 | -4.979 | 1.379 | -4.979 |
06 | -4.979 | -4.21 | 1.379 | -4.979 |
07 | 1.38 | -4.979 | -4.522 | -4.979 |
08 | 1.377 | -4.979 | -4.522 | -3.972 |
09 | -1.579 | -1.794 | 1.284 | -4.21 |
10 | -0.953 | -0.084 | -1.949 | 0.937 |
11 | -0.452 | -0.458 | 0.873 | -1.086 |
P-value | Threshold |
---|---|
0.001 | 3.17172 |
0.0005 | 4.47641 |
0.0001 | 7.180585 |