Motif | ELF3.H12RSNP.1.PM.A |
Gene (human) | ELF3 (GeneCards) |
Gene synonyms (human) | ERT, ESX, JEN |
Gene (mouse) | Elf3 |
Gene synonyms (mouse) | Ert, Esx, Jen |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | A |
Motif | ELF3.H12RSNP.1.PM.A |
Gene (human) | ELF3 (GeneCards) |
Gene synonyms (human) | ERT, ESX, JEN |
Gene (mouse) | Elf3 |
Gene synonyms (mouse) | Ert, Esx, Jen |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | A |
Motif length | 13 |
Consensus | hWbSAGGAAGTRv |
GC content | 43.56% |
Information content (bits; total / per base) | 15.144 / 1.165 |
Data sources | ChIP-Seq + Methyl-HT-SELEX |
Aligned words | 9786 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 5 (28) | 0.903 | 0.96 | 0.829 | 0.924 | 0.911 | 0.965 | 3.71 | 4.689 | 256.849 | 406.745 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 5 experiments | median | 0.974 | 0.965 | 0.798 | 0.81 | 0.646 | 0.684 |
best | 0.998 | 0.997 | 0.992 | 0.989 | 0.933 | 0.928 | |
Methyl HT-SELEX, 1 experiments | median | 0.998 | 0.997 | 0.992 | 0.989 | 0.881 | 0.892 |
best | 0.998 | 0.997 | 0.992 | 0.989 | 0.881 | 0.892 | |
Non-Methyl HT-SELEX, 4 experiments | median | 0.926 | 0.91 | 0.765 | 0.768 | 0.636 | 0.661 |
best | 0.994 | 0.99 | 0.989 | 0.982 | 0.933 | 0.928 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 1 | 0.888 | 0.552 | 0.846 | 0.536 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Tryptophan cluster factors {3.5} (TFClass) |
TF family | Ets-related {3.5.2} (TFClass) |
TF subfamily | EHF-like {3.5.2.4} (TFClass) |
TFClass ID | TFClass: 3.5.2.4.2 |
HGNC | HGNC:3318 |
MGI | MGI:1101781 |
EntrezGene (human) | GeneID:1999 (SSTAR profile) |
EntrezGene (mouse) | GeneID:13710 (SSTAR profile) |
UniProt ID (human) | ELF3_HUMAN |
UniProt ID (mouse) | ELF3_MOUSE |
UniProt AC (human) | P78545 (TFClass) |
UniProt AC (mouse) | Q3UPW2 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 5 human, 0 mouse |
HT-SELEX | 4 |
Methyl-HT-SELEX | 1 |
PCM | ELF3.H12RSNP.1.PM.A.pcm |
PWM | ELF3.H12RSNP.1.PM.A.pwm |
PFM | ELF3.H12RSNP.1.PM.A.pfm |
Alignment | ELF3.H12RSNP.1.PM.A.words.tsv |
Threshold to P-value map | ELF3.H12RSNP.1.PM.A.thr |
Motif in other formats | |
JASPAR format | ELF3.H12RSNP.1.PM.A_jaspar_format.txt |
MEME format | ELF3.H12RSNP.1.PM.A_meme_format.meme |
Transfac format | ELF3.H12RSNP.1.PM.A_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 3481.25 | 1532.25 | 1493.25 | 3279.25 |
02 | 7591.25 | 262.25 | 376.25 | 1556.25 |
03 | 1504.0 | 5237.0 | 1514.0 | 1531.0 |
04 | 1823.0 | 5986.0 | 1917.0 | 60.0 |
05 | 8809.0 | 928.0 | 38.0 | 11.0 |
06 | 0.0 | 1.0 | 9785.0 | 0.0 |
07 | 0.0 | 0.0 | 9786.0 | 0.0 |
08 | 9786.0 | 0.0 | 0.0 | 0.0 |
09 | 9782.0 | 3.0 | 0.0 | 1.0 |
10 | 1058.0 | 14.0 | 8711.0 | 3.0 |
11 | 82.0 | 456.0 | 187.0 | 9061.0 |
12 | 5776.25 | 363.25 | 2839.25 | 807.25 |
13 | 4272.5 | 2016.5 | 1964.5 | 1532.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.356 | 0.157 | 0.153 | 0.335 |
02 | 0.776 | 0.027 | 0.038 | 0.159 |
03 | 0.154 | 0.535 | 0.155 | 0.156 |
04 | 0.186 | 0.612 | 0.196 | 0.006 |
05 | 0.9 | 0.095 | 0.004 | 0.001 |
06 | 0.0 | 0.0 | 1.0 | 0.0 |
07 | 0.0 | 0.0 | 1.0 | 0.0 |
08 | 1.0 | 0.0 | 0.0 | 0.0 |
09 | 1.0 | 0.0 | 0.0 | 0.0 |
10 | 0.108 | 0.001 | 0.89 | 0.0 |
11 | 0.008 | 0.047 | 0.019 | 0.926 |
12 | 0.59 | 0.037 | 0.29 | 0.082 |
13 | 0.437 | 0.206 | 0.201 | 0.157 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.352 | -0.467 | -0.493 | 0.293 |
02 | 1.132 | -2.225 | -1.867 | -0.452 |
03 | -0.486 | 0.761 | -0.479 | -0.468 |
04 | -0.294 | 0.894 | -0.244 | -3.671 |
05 | 1.28 | -0.968 | -4.107 | -5.216 |
06 | -6.972 | -6.61 | 1.385 | -6.972 |
07 | -6.972 | -6.972 | 1.386 | -6.972 |
08 | 1.386 | -6.972 | -6.972 | -6.972 |
09 | 1.385 | -6.136 | -6.972 | -6.61 |
10 | -0.837 | -5.012 | 1.269 | -6.136 |
11 | -3.369 | -1.676 | -2.56 | 1.309 |
12 | 0.859 | -1.902 | 0.149 | -1.107 |
13 | 0.557 | -0.193 | -0.219 | -0.467 |
P-value | Threshold |
---|---|
0.001 | 0.87071 |
0.0005 | 2.68402 |
0.0001 | 6.30185 |