MotifELF3.H12INVITRO.0.S.B
Gene (human)ELF3
(GeneCards)
Gene synonyms (human)ERT, ESX, JEN
Gene (mouse)Elf3
Gene synonyms (mouse)Ert, Esx, Jen
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length13
ConsensusnWbSCGGAAGTdn
GC content52.29%
Information content (bits; total / per base)14.057 / 1.081
Data sourcesHT-SELEX
Aligned words9924

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 5 (28) 0.922 0.966 0.857 0.929 0.913 0.95 3.511 3.877 269.261 399.921

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 5 experiments median 0.984 0.981 0.809 0.824 0.652 0.692
best 0.998 0.997 0.994 0.992 0.954 0.95
Methyl HT-SELEX, 1 experiments median 0.993 0.989 0.987 0.98 0.891 0.895
best 0.993 0.989 0.987 0.98 0.891 0.895
Non-Methyl HT-SELEX, 4 experiments median 0.947 0.938 0.785 0.79 0.648 0.676
best 0.998 0.997 0.994 0.992 0.954 0.95

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.888 0.63 0.849 0.554
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classTryptophan cluster factors {3.5} (TFClass)
TF familyEts-related {3.5.2} (TFClass)
TF subfamilyEHF-like {3.5.2.4} (TFClass)
TFClass IDTFClass: 3.5.2.4.2
HGNCHGNC:3318
MGIMGI:1101781
EntrezGene (human)GeneID:1999
(SSTAR profile)
EntrezGene (mouse)GeneID:13710
(SSTAR profile)
UniProt ID (human)ELF3_HUMAN
UniProt ID (mouse)ELF3_MOUSE
UniProt AC (human)P78545
(TFClass)
UniProt AC (mouse)Q3UPW2
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 5 human, 0 mouse
HT-SELEX 4
Methyl-HT-SELEX 1
PCM
ACGT
012932.752163.751819.753007.75
026645.75450.75563.752263.75
031307.05215.01439.01963.0
041302.06079.02503.040.0
051095.08742.072.015.0
061.02.09916.05.0
071.00.09923.00.0
089923.00.00.01.0
099883.00.01.040.0
101244.034.08640.06.0
11159.01038.0260.08467.0
125023.0650.03092.01159.0
133452.02675.02178.01619.0
PFM
ACGT
010.2960.2180.1830.303
020.670.0450.0570.228
030.1320.5250.1450.198
040.1310.6130.2520.004
050.110.8810.0070.002
060.00.00.9990.001
070.00.01.00.0
081.00.00.00.0
090.9960.00.00.004
100.1250.0030.8710.001
110.0160.1050.0260.853
120.5060.0650.3120.117
130.3480.270.2190.163
PWM
ACGT
010.167-0.137-0.310.192
020.985-1.701-1.479-0.092
03-0.640.742-0.544-0.234
04-0.6440.8960.009-4.073
05-0.8171.259-3.509-4.967
06-6.623-6.3591.385-5.829
07-6.623-6.9841.385-6.984
081.385-6.984-6.984-6.623
091.381-6.984-6.623-4.073
10-0.689-4.2261.247-5.701
11-2.734-0.87-2.2481.227
120.705-1.3370.22-0.76
130.330.075-0.13-0.426
Standard thresholds
P-value Threshold
0.001 1.88416
0.0005 3.59726
0.0001 6.89973