Motif | ELF2.H12RSNP.1.M.B |
Gene (human) | ELF2 (GeneCards) |
Gene synonyms (human) | NERF |
Gene (mouse) | Elf2 |
Gene synonyms (mouse) | Nerf |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | ELF2.H12RSNP.1.M.B |
Gene (human) | ELF2 (GeneCards) |
Gene synonyms (human) | NERF |
Gene (mouse) | Elf2 |
Gene synonyms (mouse) | Nerf |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 13 |
Consensus | ddnSMGGAAGTdn |
GC content | 48.85% |
Information content (bits; total / per base) | 13.788 / 1.061 |
Data sources | Methyl-HT-SELEX |
Aligned words | 9397 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 2 (11) | 0.852 | 0.913 | 0.766 | 0.787 | 0.865 | 0.94 | 3.346 | 4.155 | 27.854 | 74.149 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 5 experiments | median | 0.998 | 0.997 | 0.997 | 0.994 | 0.988 | 0.985 |
best | 1.0 | 0.999 | 1.0 | 0.999 | 0.999 | 0.998 | |
Methyl HT-SELEX, 2 experiments | median | 0.999 | 0.998 | 0.995 | 0.993 | 0.921 | 0.929 |
best | 0.999 | 0.999 | 0.997 | 0.995 | 0.988 | 0.985 | |
Non-Methyl HT-SELEX, 3 experiments | median | 0.998 | 0.996 | 0.997 | 0.994 | 0.992 | 0.989 |
best | 1.0 | 0.999 | 1.0 | 0.999 | 0.999 | 0.998 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 1 | 0.958 | 0.575 | 0.936 | 0.593 |
batch 2 | 0.889 | 0.698 | 0.883 | 0.648 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Tryptophan cluster factors {3.5} (TFClass) |
TF family | Ets-related {3.5.2} (TFClass) |
TF subfamily | ELF1-like {3.5.2.3} (TFClass) |
TFClass ID | TFClass: 3.5.2.3.2 |
HGNC | HGNC:3317 |
MGI | MGI:1916507 |
EntrezGene (human) | GeneID:1998 (SSTAR profile) |
EntrezGene (mouse) | GeneID:69257 (SSTAR profile) |
UniProt ID (human) | ELF2_HUMAN |
UniProt ID (mouse) | ELF2_MOUSE |
UniProt AC (human) | Q15723 (TFClass) |
UniProt AC (mouse) | Q9JHC9 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 2 human, 0 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 2 |
PCM | ELF2.H12RSNP.1.M.B.pcm |
PWM | ELF2.H12RSNP.1.M.B.pwm |
PFM | ELF2.H12RSNP.1.M.B.pfm |
Alignment | ELF2.H12RSNP.1.M.B.words.tsv |
Threshold to P-value map | ELF2.H12RSNP.1.M.B.thr |
Motif in other formats | |
JASPAR format | ELF2.H12RSNP.1.M.B_jaspar_format.txt |
MEME format | ELF2.H12RSNP.1.M.B_meme_format.meme |
Transfac format | ELF2.H12RSNP.1.M.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 3664.75 | 1317.75 | 2420.75 | 1993.75 |
02 | 4907.0 | 640.0 | 1208.0 | 2642.0 |
03 | 3464.0 | 2051.0 | 1571.0 | 2311.0 |
04 | 763.0 | 6852.0 | 1451.0 | 331.0 |
05 | 5423.0 | 3946.0 | 24.0 | 4.0 |
06 | 0.0 | 1.0 | 9396.0 | 0.0 |
07 | 0.0 | 0.0 | 9397.0 | 0.0 |
08 | 9397.0 | 0.0 | 0.0 | 0.0 |
09 | 9395.0 | 1.0 | 0.0 | 1.0 |
10 | 134.0 | 5.0 | 9258.0 | 0.0 |
11 | 159.0 | 923.0 | 269.0 | 8046.0 |
12 | 4430.0 | 736.0 | 3386.0 | 845.0 |
13 | 2946.5 | 2621.5 | 2204.5 | 1624.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.39 | 0.14 | 0.258 | 0.212 |
02 | 0.522 | 0.068 | 0.129 | 0.281 |
03 | 0.369 | 0.218 | 0.167 | 0.246 |
04 | 0.081 | 0.729 | 0.154 | 0.035 |
05 | 0.577 | 0.42 | 0.003 | 0.0 |
06 | 0.0 | 0.0 | 1.0 | 0.0 |
07 | 0.0 | 0.0 | 1.0 | 0.0 |
08 | 1.0 | 0.0 | 0.0 | 0.0 |
09 | 1.0 | 0.0 | 0.0 | 0.0 |
10 | 0.014 | 0.001 | 0.985 | 0.0 |
11 | 0.017 | 0.098 | 0.029 | 0.856 |
12 | 0.471 | 0.078 | 0.36 | 0.09 |
13 | 0.314 | 0.279 | 0.235 | 0.173 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.444 | -0.577 | 0.03 | -0.164 |
02 | 0.736 | -1.298 | -0.664 | 0.117 |
03 | 0.388 | -0.136 | -0.402 | -0.016 |
04 | -1.123 | 1.07 | -0.481 | -1.954 |
05 | 0.836 | 0.518 | -4.494 | -5.924 |
06 | -6.936 | -6.573 | 1.385 | -6.936 |
07 | -6.936 | -6.936 | 1.386 | -6.936 |
08 | 1.386 | -6.936 | -6.936 | -6.936 |
09 | 1.385 | -6.573 | -6.936 | -6.573 |
10 | -2.848 | -5.777 | 1.371 | -6.936 |
11 | -2.68 | -0.933 | -2.16 | 1.23 |
12 | 0.634 | -1.158 | 0.365 | -1.021 |
13 | 0.226 | 0.11 | -0.064 | -0.368 |
P-value | Threshold |
---|---|
0.001 | 1.33331 |
0.0005 | 3.259965 |
0.0001 | 7.07211 |