MotifELF2.H12RSNP.1.M.B
Gene (human)ELF2
(GeneCards)
Gene synonyms (human)NERF
Gene (mouse)Elf2
Gene synonyms (mouse)Nerf
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length13
ConsensusddnSMGGAAGTdn
GC content48.85%
Information content (bits; total / per base)13.788 / 1.061
Data sourcesMethyl-HT-SELEX
Aligned words9397

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (11) 0.852 0.913 0.766 0.787 0.865 0.94 3.346 4.155 27.854 74.149

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 5 experiments median 0.998 0.997 0.997 0.994 0.988 0.985
best 1.0 0.999 1.0 0.999 0.999 0.998
Methyl HT-SELEX, 2 experiments median 0.999 0.998 0.995 0.993 0.921 0.929
best 0.999 0.999 0.997 0.995 0.988 0.985
Non-Methyl HT-SELEX, 3 experiments median 0.998 0.996 0.997 0.994 0.992 0.989
best 1.0 0.999 1.0 0.999 0.999 0.998

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.958 0.575 0.936 0.593
batch 2 0.889 0.698 0.883 0.648
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classTryptophan cluster factors {3.5} (TFClass)
TF familyEts-related {3.5.2} (TFClass)
TF subfamilyELF1-like {3.5.2.3} (TFClass)
TFClass IDTFClass: 3.5.2.3.2
HGNCHGNC:3317
MGIMGI:1916507
EntrezGene (human)GeneID:1998
(SSTAR profile)
EntrezGene (mouse)GeneID:69257
(SSTAR profile)
UniProt ID (human)ELF2_HUMAN
UniProt ID (mouse)ELF2_MOUSE
UniProt AC (human)Q15723
(TFClass)
UniProt AC (mouse)Q9JHC9
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 2
PCM
ACGT
013664.751317.752420.751993.75
024907.0640.01208.02642.0
033464.02051.01571.02311.0
04763.06852.01451.0331.0
055423.03946.024.04.0
060.01.09396.00.0
070.00.09397.00.0
089397.00.00.00.0
099395.01.00.01.0
10134.05.09258.00.0
11159.0923.0269.08046.0
124430.0736.03386.0845.0
132946.52621.52204.51624.5
PFM
ACGT
010.390.140.2580.212
020.5220.0680.1290.281
030.3690.2180.1670.246
040.0810.7290.1540.035
050.5770.420.0030.0
060.00.01.00.0
070.00.01.00.0
081.00.00.00.0
091.00.00.00.0
100.0140.0010.9850.0
110.0170.0980.0290.856
120.4710.0780.360.09
130.3140.2790.2350.173
PWM
ACGT
010.444-0.5770.03-0.164
020.736-1.298-0.6640.117
030.388-0.136-0.402-0.016
04-1.1231.07-0.481-1.954
050.8360.518-4.494-5.924
06-6.936-6.5731.385-6.936
07-6.936-6.9361.386-6.936
081.386-6.936-6.936-6.936
091.385-6.573-6.936-6.573
10-2.848-5.7771.371-6.936
11-2.68-0.933-2.161.23
120.634-1.1580.365-1.021
130.2260.11-0.064-0.368
Standard thresholds
P-value Threshold
0.001 1.33331
0.0005 3.259965
0.0001 7.07211