MotifELF2.H12CORE.0.PS.A
Gene (human)ELF2
(GeneCards)
Gene synonyms (human)NERF
Gene (mouse)Elf2
Gene synonyms (mouse)Nerf
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length12
ConsensusdvSCGGAAGYRv
GC content61.89%
Information content (bits; total / per base)12.962 / 1.08
Data sourcesChIP-Seq + HT-SELEX
Aligned words1001

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (11) 0.88 0.935 0.819 0.881 0.87 0.954 3.494 4.638 39.018 88.921

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 5 experiments median 0.996 0.993 0.993 0.988 0.984 0.977
best 1.0 0.999 0.999 0.999 0.998 0.997
Methyl HT-SELEX, 2 experiments median 0.996 0.993 0.99 0.986 0.917 0.921
best 0.996 0.993 0.993 0.988 0.984 0.977
Non-Methyl HT-SELEX, 3 experiments median 0.998 0.996 0.996 0.994 0.993 0.989
best 1.0 0.999 0.999 0.999 0.998 0.997

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.981 0.751 0.957 0.584
batch 2 0.881 0.717 0.901 0.673
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classTryptophan cluster factors {3.5} (TFClass)
TF familyEts-related {3.5.2} (TFClass)
TF subfamilyELF1-like {3.5.2.3} (TFClass)
TFClass IDTFClass: 3.5.2.3.2
HGNCHGNC:3317
MGIMGI:1916507
EntrezGene (human)GeneID:1998
(SSTAR profile)
EntrezGene (mouse)GeneID:69257
(SSTAR profile)
UniProt ID (human)ELF2_HUMAN
UniProt ID (mouse)ELF2_MOUSE
UniProt AC (human)Q15723
(TFClass)
UniProt AC (mouse)Q9JHC9
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 2
PCM
ACGT
01472.0136.0222.0171.0
02272.0332.0313.084.0
0351.0690.0244.016.0
04147.0837.09.08.0
053.02.0994.02.0
063.00.0998.00.0
07993.03.02.03.0
08991.01.03.06.0
0962.013.0925.01.0
10100.0234.044.0623.0
11155.0121.0629.096.0
12241.0189.0493.078.0
PFM
ACGT
010.4720.1360.2220.171
020.2720.3320.3130.084
030.0510.6890.2440.016
040.1470.8360.0090.008
050.0030.0020.9930.002
060.0030.00.9970.0
070.9920.0030.0020.003
080.990.0010.0030.006
090.0620.0130.9240.001
100.10.2340.0440.622
110.1550.1210.6280.096
120.2410.1890.4930.078
PWM
ACGT
010.631-0.604-0.119-0.378
020.0830.2810.222-1.078
03-1.5641.01-0.025-2.654
04-0.5271.203-3.157-3.254
05-3.976-4.2141.374-4.214
06-3.976-4.9831.378-4.983
071.373-3.976-4.214-3.976
081.371-4.526-3.976-3.485
09-1.375-2.841.302-4.526
10-0.907-0.067-1.7070.908
11-0.475-0.7190.918-0.947
12-0.037-0.2780.675-1.151
Standard thresholds
P-value Threshold
0.001 3.46211
0.0005 4.66396
0.0001 7.225095