ELF1.H12INVITRO.0.PSM.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ELF1.H12INVITRO.0.PSM.A
Gene (human)	ELF1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Elf1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	13
Consensus	ddhCCGGAAGTRn
GC content	53.69%
Information content (bits; total / per base)	15.696 / 1.207
Data sources	ChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words	9995

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	28 (179)	0.949	0.98	0.901	0.961	0.939	0.969	4.278	4.887	321.076	630.721
Mouse	5 (33)	0.954	0.972	0.905	0.932	0.942	0.966	4.283	4.662	322.959	399.62

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 5 experiments	median	1.0	0.999	0.999	0.998	0.965	0.966
Overall, 5 experiments	best	1.0	1.0	0.999	0.999	0.998	0.997
Methyl HT-SELEX, 2 experiments	median	0.996	0.993	0.993	0.989	0.96	0.957
Methyl HT-SELEX, 2 experiments	best	1.0	0.999	0.999	0.998	0.978	0.967
Non-Methyl HT-SELEX, 3 experiments	median	1.0	0.999	0.999	0.998	0.965	0.966
Non-Methyl HT-SELEX, 3 experiments	best	1.0	1.0	0.999	0.999	0.998	0.997

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	8.584	39.953	0.294	0.21

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 1	0.998	0.877	0.976	0.564
batch 2	0.834	0.656	0.827	0.595

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Tryptophan cluster factors {3.5} (TFClass)
TF family	Ets-related {3.5.2} (TFClass)
TF subfamily	ELF1-like {3.5.2.3} (TFClass)
TFClass ID	TFClass: 3.5.2.3.1
HGNC	HGNC:3316
MGI	MGI:107180
EntrezGene (human)	GeneID:1997 (SSTAR profile)
EntrezGene (mouse)	GeneID:13709 (SSTAR profile)
UniProt ID (human)	ELF1_HUMAN
UniProt ID (mouse)	ELF1_MOUSE
UniProt AC (human)	P32519 (TFClass)
UniProt AC (mouse)	Q60775 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	28 human, 5 mouse
HT-SELEX	3
Methyl-HT-SELEX	2

PCM	ELF1.H12INVITRO.0.PSM.A.pcm
PWM	ELF1.H12INVITRO.0.PSM.A.pwm
PFM	ELF1.H12INVITRO.0.PSM.A.pfm
Alignment	ELF1.H12INVITRO.0.PSM.A.words.tsv
Threshold to P-value map	ELF1.H12INVITRO.0.PSM.A.thr
Motif in other formats
JASPAR format	ELF1.H12INVITRO.0.PSM.A_jaspar_format.txt
MEME format	ELF1.H12INVITRO.0.PSM.A_meme_format.meme
Transfac format	ELF1.H12INVITRO.0.PSM.A_transfac_format.txt
Homer format	ELF1.H12INVITRO.0.PSM.A_homer_format_0.001.txt ELF1.H12INVITRO.0.PSM.A_homer_format_0.0005.txt ELF1.H12INVITRO.0.PSM.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	4864.25	1382.25	1755.25	1993.25
02	5466.25	932.25	950.25	2646.25
03	3070.0	4309.0	711.0	1905.0
04	131.0	8632.0	1189.0	43.0
05	684.0	9236.0	55.0	20.0
06	10.0	7.0	9965.0	13.0
07	6.0	4.0	9982.0	3.0
08	9981.0	3.0	4.0	7.0
09	9978.0	1.0	6.0	10.0
10	143.0	30.0	9813.0	9.0
11	74.0	179.0	73.0	9669.0
12	4435.5	598.5	4273.5	687.5
13	2746.5	2922.5	2752.5	1573.5

PFM

	A	C	G	T
01	0.487	0.138	0.176	0.199
02	0.547	0.093	0.095	0.265
03	0.307	0.431	0.071	0.191
04	0.013	0.864	0.119	0.004
05	0.068	0.924	0.006	0.002
06	0.001	0.001	0.997	0.001
07	0.001	0.0	0.999	0.0
08	0.999	0.0	0.0	0.001
09	0.998	0.0	0.001	0.001
10	0.014	0.003	0.982	0.001
11	0.007	0.018	0.007	0.967
12	0.444	0.06	0.428	0.069
13	0.275	0.292	0.275	0.157

PWM

	A	C	G	T
01	0.666	-0.591	-0.353	-0.226
02	0.782	-0.984	-0.965	0.057
03	0.206	0.545	-1.255	-0.271
04	-2.932	1.239	-0.742	-4.011
05	-1.293	1.307	-3.776	-4.72
06	-5.315	-5.594	1.383	-5.096
07	-5.708	-5.984	1.384	-6.156
08	1.384	-6.156	-5.984	-5.594
09	1.384	-6.63	-5.708	-5.315
10	-2.846	-4.349	1.367	-5.399
11	-3.49	-2.624	-3.503	1.352
12	0.573	-1.426	0.536	-1.288
13	0.094	0.157	0.097	-0.462

Standard thresholds

P-value	Threshold
0.001	0.74876
0.0005	2.434225
0.0001	5.72171