Motif | EHF.H12RSNP.0.P.D |
Gene (human) | EHF (GeneCards) |
Gene synonyms (human) | ESE3, ESE3B, ESEJ |
Gene (mouse) | Ehf |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif | EHF.H12RSNP.0.P.D |
Gene (human) | EHF (GeneCards) |
Gene synonyms (human) | ESE3, ESE3B, ESEJ |
Gene (mouse) | Ehf |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif length | 15 |
Consensus | vdAbSAGGAAGYdvv |
GC content | 50.26% |
Information content (bits; total / per base) | 13.878 / 0.925 |
Data sources | ChIP-Seq |
Aligned words | 1007 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 5 (30) | 0.943 | 0.968 | 0.884 | 0.927 | 0.95 | 0.974 | 4.354 | 4.888 | 319.667 | 554.638 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Tryptophan cluster factors {3.5} (TFClass) |
TF family | Ets-related {3.5.2} (TFClass) |
TF subfamily | EHF-like {3.5.2.4} (TFClass) |
TFClass ID | TFClass: 3.5.2.4.1 |
HGNC | HGNC:3246 |
MGI | MGI:1270840 |
EntrezGene (human) | GeneID:26298 (SSTAR profile) |
EntrezGene (mouse) | GeneID:13661 (SSTAR profile) |
UniProt ID (human) | EHF_HUMAN |
UniProt ID (mouse) | EHF_MOUSE |
UniProt AC (human) | Q9NZC4 (TFClass) |
UniProt AC (mouse) | O70273 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 5 human, 0 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | EHF.H12RSNP.0.P.D.pcm |
PWM | EHF.H12RSNP.0.P.D.pwm |
PFM | EHF.H12RSNP.0.P.D.pfm |
Alignment | EHF.H12RSNP.0.P.D.words.tsv |
Threshold to P-value map | EHF.H12RSNP.0.P.D.thr |
Motif in other formats | |
JASPAR format | EHF.H12RSNP.0.P.D_jaspar_format.txt |
MEME format | EHF.H12RSNP.0.P.D_meme_format.meme |
Transfac format | EHF.H12RSNP.0.P.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 237.0 | 222.0 | 405.0 | 143.0 |
02 | 457.0 | 161.0 | 171.0 | 218.0 |
03 | 845.0 | 7.0 | 11.0 | 144.0 |
04 | 123.0 | 488.0 | 190.0 | 206.0 |
05 | 197.0 | 519.0 | 290.0 | 1.0 |
06 | 790.0 | 204.0 | 13.0 | 0.0 |
07 | 0.0 | 1.0 | 1006.0 | 0.0 |
08 | 0.0 | 0.0 | 1007.0 | 0.0 |
09 | 1005.0 | 1.0 | 1.0 | 0.0 |
10 | 1000.0 | 0.0 | 0.0 | 7.0 |
11 | 227.0 | 12.0 | 768.0 | 0.0 |
12 | 28.0 | 166.0 | 42.0 | 771.0 |
13 | 302.0 | 106.0 | 394.0 | 205.0 |
14 | 236.0 | 225.0 | 439.0 | 107.0 |
15 | 158.0 | 359.0 | 384.0 | 106.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.235 | 0.22 | 0.402 | 0.142 |
02 | 0.454 | 0.16 | 0.17 | 0.216 |
03 | 0.839 | 0.007 | 0.011 | 0.143 |
04 | 0.122 | 0.485 | 0.189 | 0.205 |
05 | 0.196 | 0.515 | 0.288 | 0.001 |
06 | 0.785 | 0.203 | 0.013 | 0.0 |
07 | 0.0 | 0.001 | 0.999 | 0.0 |
08 | 0.0 | 0.0 | 1.0 | 0.0 |
09 | 0.998 | 0.001 | 0.001 | 0.0 |
10 | 0.993 | 0.0 | 0.0 | 0.007 |
11 | 0.225 | 0.012 | 0.763 | 0.0 |
12 | 0.028 | 0.165 | 0.042 | 0.766 |
13 | 0.3 | 0.105 | 0.391 | 0.204 |
14 | 0.234 | 0.223 | 0.436 | 0.106 |
15 | 0.157 | 0.357 | 0.381 | 0.105 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.06 | -0.125 | 0.473 | -0.56 |
02 | 0.593 | -0.443 | -0.384 | -0.143 |
03 | 1.206 | -3.369 | -2.991 | -0.554 |
04 | -0.709 | 0.659 | -0.279 | -0.199 |
05 | -0.243 | 0.72 | 0.141 | -4.531 |
06 | 1.139 | -0.209 | -2.845 | -4.988 |
07 | -4.988 | -4.531 | 1.38 | -4.988 |
08 | -4.988 | -4.988 | 1.381 | -4.988 |
09 | 1.379 | -4.531 | -4.531 | -4.988 |
10 | 1.374 | -4.988 | -4.988 | -3.369 |
11 | -0.103 | -2.916 | 1.111 | -4.988 |
12 | -2.143 | -0.413 | -1.757 | 1.115 |
13 | 0.181 | -0.856 | 0.445 | -0.204 |
14 | -0.064 | -0.112 | 0.553 | -0.846 |
15 | -0.462 | 0.353 | 0.42 | -0.856 |
P-value | Threshold |
---|---|
0.001 | 2.76576 |
0.0005 | 4.10561 |
0.0001 | 7.01671 |