EHF.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	EHF.H12INVITRO.0.P.D
Gene (human)	EHF (GeneCards)
Gene synonyms (human)	ESE3, ESE3B, ESEJ
Gene (mouse)	Ehf
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	15
Consensus	vdAbSAGGAAGYdvv
GC content	50.26%
Information content (bits; total / per base)	13.878 / 0.925
Data sources	ChIP-Seq
Aligned words	1007

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	5 (30)	0.943	0.968	0.884	0.927	0.95	0.974	4.354	4.888	319.667	554.638

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Tryptophan cluster factors {3.5} (TFClass)
TF family	Ets-related {3.5.2} (TFClass)
TF subfamily	EHF-like {3.5.2.4} (TFClass)
TFClass ID	TFClass: 3.5.2.4.1
HGNC	HGNC:3246
MGI	MGI:1270840
EntrezGene (human)	GeneID:26298 (SSTAR profile)
EntrezGene (mouse)	GeneID:13661 (SSTAR profile)
UniProt ID (human)	EHF_HUMAN
UniProt ID (mouse)	EHF_MOUSE
UniProt AC (human)	Q9NZC4 (TFClass)
UniProt AC (mouse)	O70273 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	5 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	EHF.H12INVITRO.0.P.D.pcm
PWM	EHF.H12INVITRO.0.P.D.pwm
PFM	EHF.H12INVITRO.0.P.D.pfm
Alignment	EHF.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	EHF.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	EHF.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	EHF.H12INVITRO.0.P.D_meme_format.meme
Transfac format	EHF.H12INVITRO.0.P.D_transfac_format.txt
Homer format	EHF.H12INVITRO.0.P.D_homer_format_0.001.txt EHF.H12INVITRO.0.P.D_homer_format_0.0005.txt EHF.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	237.0	222.0	405.0	143.0
02	457.0	161.0	171.0	218.0
03	845.0	7.0	11.0	144.0
04	123.0	488.0	190.0	206.0
05	197.0	519.0	290.0	1.0
06	790.0	204.0	13.0	0.0
07	0.0	1.0	1006.0	0.0
08	0.0	0.0	1007.0	0.0
09	1005.0	1.0	1.0	0.0
10	1000.0	0.0	0.0	7.0
11	227.0	12.0	768.0	0.0
12	28.0	166.0	42.0	771.0
13	302.0	106.0	394.0	205.0
14	236.0	225.0	439.0	107.0
15	158.0	359.0	384.0	106.0

PFM

	A	C	G	T
01	0.235	0.22	0.402	0.142
02	0.454	0.16	0.17	0.216
03	0.839	0.007	0.011	0.143
04	0.122	0.485	0.189	0.205
05	0.196	0.515	0.288	0.001
06	0.785	0.203	0.013	0.0
07	0.0	0.001	0.999	0.0
08	0.0	0.0	1.0	0.0
09	0.998	0.001	0.001	0.0
10	0.993	0.0	0.0	0.007
11	0.225	0.012	0.763	0.0
12	0.028	0.165	0.042	0.766
13	0.3	0.105	0.391	0.204
14	0.234	0.223	0.436	0.106
15	0.157	0.357	0.381	0.105

PWM

	A	C	G	T
01	-0.06	-0.125	0.473	-0.56
02	0.593	-0.443	-0.384	-0.143
03	1.206	-3.369	-2.991	-0.554
04	-0.709	0.659	-0.279	-0.199
05	-0.243	0.72	0.141	-4.531
06	1.139	-0.209	-2.845	-4.988
07	-4.988	-4.531	1.38	-4.988
08	-4.988	-4.988	1.381	-4.988
09	1.379	-4.531	-4.531	-4.988
10	1.374	-4.988	-4.988	-3.369
11	-0.103	-2.916	1.111	-4.988
12	-2.143	-0.413	-1.757	1.115
13	0.181	-0.856	0.445	-0.204
14	-0.064	-0.112	0.553	-0.846
15	-0.462	0.353	0.42	-0.856

Standard thresholds

P-value	Threshold
0.001	2.76576
0.0005	4.10561
0.0001	7.01671