| Motif | EGR4.H12INVIVO.0.S.D |
| Gene (human) | EGR4 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Egr4 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | EGR4.H12INVIVO.0.S.D |
| Gene (human) | EGR4 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Egr4 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 10 |
| Consensus | RKGGGCGKdn |
| GC content | 66.72% |
| Information content (bits; total / per base) | 10.249 / 1.025 |
| Data sources | HT-SELEX |
| Aligned words | 3987 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 5 experiments | median | 0.667 | 0.629 | 0.585 | 0.585 | 0.547 | 0.556 |
| best | 0.988 | 0.979 | 0.983 | 0.972 | 0.954 | 0.941 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Three-zinc finger Kruppel-related {2.3.1} (TFClass) |
| TF subfamily | EGR {2.3.1.3} (TFClass) |
| TFClass ID | TFClass: 2.3.1.3.4 |
| HGNC | HGNC:3241 |
| MGI | MGI:99252 |
| EntrezGene (human) | GeneID:1961 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:13656 (SSTAR profile) |
| UniProt ID (human) | EGR4_HUMAN |
| UniProt ID (mouse) | EGR4_MOUSE |
| UniProt AC (human) | Q05215 (TFClass) |
| UniProt AC (mouse) | Q9WUF2 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 5 |
| Methyl-HT-SELEX | 0 |
| PCM | EGR4.H12INVIVO.0.S.D.pcm |
| PWM | EGR4.H12INVIVO.0.S.D.pwm |
| PFM | EGR4.H12INVIVO.0.S.D.pfm |
| Alignment | EGR4.H12INVIVO.0.S.D.words.tsv |
| Threshold to P-value map | EGR4.H12INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | EGR4.H12INVIVO.0.S.D_jaspar_format.txt |
| MEME format | EGR4.H12INVIVO.0.S.D_meme_format.meme |
| Transfac format | EGR4.H12INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 559.75 | 305.75 | 2679.75 | 441.75 |
| 02 | 412.75 | 127.75 | 814.75 | 2631.75 |
| 03 | 617.0 | 0.0 | 3338.0 | 32.0 |
| 04 | 294.0 | 389.0 | 3304.0 | 0.0 |
| 05 | 4.0 | 0.0 | 3983.0 | 0.0 |
| 06 | 34.0 | 3727.0 | 0.0 | 226.0 |
| 07 | 154.0 | 0.0 | 3833.0 | 0.0 |
| 08 | 206.0 | 11.0 | 959.0 | 2811.0 |
| 09 | 1369.25 | 202.25 | 1294.25 | 1121.25 |
| 10 | 1056.25 | 544.25 | 1090.25 | 1296.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.14 | 0.077 | 0.672 | 0.111 |
| 02 | 0.104 | 0.032 | 0.204 | 0.66 |
| 03 | 0.155 | 0.0 | 0.837 | 0.008 |
| 04 | 0.074 | 0.098 | 0.829 | 0.0 |
| 05 | 0.001 | 0.0 | 0.999 | 0.0 |
| 06 | 0.009 | 0.935 | 0.0 | 0.057 |
| 07 | 0.039 | 0.0 | 0.961 | 0.0 |
| 08 | 0.052 | 0.003 | 0.241 | 0.705 |
| 09 | 0.343 | 0.051 | 0.325 | 0.281 |
| 10 | 0.265 | 0.137 | 0.273 | 0.325 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.575 | -1.177 | 0.988 | -0.811 |
| 02 | -0.879 | -2.04 | -0.201 | 0.97 |
| 03 | -0.478 | -6.178 | 1.207 | -3.378 |
| 04 | -1.216 | -0.938 | 1.197 | -6.178 |
| 05 | -5.103 | -6.178 | 1.384 | -6.178 |
| 06 | -3.321 | 1.317 | -6.178 | -1.477 |
| 07 | -1.856 | -6.178 | 1.345 | -6.178 |
| 08 | -1.569 | -4.336 | -0.039 | 1.035 |
| 09 | 0.317 | -1.587 | 0.261 | 0.117 |
| 10 | 0.058 | -0.603 | 0.089 | 0.262 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.812005 |
| 0.0005 | 5.722385 |
| 0.0001 | 7.44758 |