MotifEGR4.H12INVIVO.0.S.D
Gene (human)EGR4
(GeneCards)
Gene synonyms (human)
Gene (mouse)Egr4
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length10
ConsensusRKGGGCGKdn
GC content66.72%
Information content (bits; total / per base)10.249 / 1.025
Data sourcesHT-SELEX
Aligned words3987

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 5 experiments median 0.667 0.629 0.585 0.585 0.547 0.556
best 0.988 0.979 0.983 0.972 0.954 0.941
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyThree-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamilyEGR {2.3.1.3} (TFClass)
TFClass IDTFClass: 2.3.1.3.4
HGNCHGNC:3241
MGIMGI:99252
EntrezGene (human)GeneID:1961
(SSTAR profile)
EntrezGene (mouse)GeneID:13656
(SSTAR profile)
UniProt ID (human)EGR4_HUMAN
UniProt ID (mouse)EGR4_MOUSE
UniProt AC (human)Q05215
(TFClass)
UniProt AC (mouse)Q9WUF2
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 5
Methyl-HT-SELEX 0
PCM
ACGT
01559.75305.752679.75441.75
02412.75127.75814.752631.75
03617.00.03338.032.0
04294.0389.03304.00.0
054.00.03983.00.0
0634.03727.00.0226.0
07154.00.03833.00.0
08206.011.0959.02811.0
091369.25202.251294.251121.25
101056.25544.251090.251296.25
PFM
ACGT
010.140.0770.6720.111
020.1040.0320.2040.66
030.1550.00.8370.008
040.0740.0980.8290.0
050.0010.00.9990.0
060.0090.9350.00.057
070.0390.00.9610.0
080.0520.0030.2410.705
090.3430.0510.3250.281
100.2650.1370.2730.325
PWM
ACGT
01-0.575-1.1770.988-0.811
02-0.879-2.04-0.2010.97
03-0.478-6.1781.207-3.378
04-1.216-0.9381.197-6.178
05-5.103-6.1781.384-6.178
06-3.3211.317-6.178-1.477
07-1.856-6.1781.345-6.178
08-1.569-4.336-0.0391.035
090.317-1.5870.2610.117
100.058-0.6030.0890.262
Standard thresholds
P-value Threshold
0.001 4.812005
0.0005 5.722385
0.0001 7.44758