MotifE4F1.H12INVIVO.0.P.B
Gene (human)E4F1
(GeneCards)
Gene synonyms (human)E4F
Gene (mouse)E4f1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length13
ConsensusvdSSMGKAARdvv
GC content54.98%
Information content (bits; total / per base)9.976 / 0.767
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 3 (20) 0.754 0.827 0.654 0.742 0.762 0.84 2.382 2.808 50.912 114.0
Mouse 2 (12) 0.773 0.937 0.716 0.894 0.749 0.915 2.598 3.575 24.409 35.229
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMultiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamilyUnclassified {2.3.4.0} (TFClass)
TFClass IDTFClass: 2.3.4.0.74
HGNCHGNC:3121
MGIMGI:109530
EntrezGene (human)GeneID:1877
(SSTAR profile)
EntrezGene (mouse)GeneID:13560
(SSTAR profile)
UniProt ID (human)E4F1_HUMAN
UniProt ID (mouse)E4F1_MOUSE
UniProt AC (human)Q66K89
(TFClass)
UniProt AC (mouse)Q8CCE9
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 3 human, 2 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01367.0271.0261.0101.0
02461.091.0200.0248.0
03172.0190.0600.038.0
0490.0655.0154.0101.0
05177.0759.012.052.0
0620.05.0953.022.0
0711.043.0644.0302.0
08975.05.020.00.0
09981.03.08.08.0
10502.04.0486.08.0
11151.0107.0372.0370.0
12156.0339.0413.092.0
13365.0136.0417.082.0
PFM
ACGT
010.3670.2710.2610.101
020.4610.0910.20.248
030.1720.190.60.038
040.090.6550.1540.101
050.1770.7590.0120.052
060.020.0050.9530.022
070.0110.0430.6440.302
080.9750.0050.020.0
090.9810.0030.0080.008
100.5020.0040.4860.008
110.1510.1070.3720.37
120.1560.3390.4130.092
130.3650.1360.4170.082
PWM
ACGT
010.3820.080.043-0.896
020.609-0.999-0.221-0.008
03-0.371-0.2720.871-1.846
04-1.010.959-0.48-0.896
05-0.3421.106-2.909-1.544
06-2.45-3.6221.333-2.362
07-2.985-1.7280.9420.188
081.356-3.622-2.45-4.982
091.362-3.975-3.253-3.253
100.694-3.7830.661-3.253
11-0.5-0.840.3950.39
12-0.4670.3030.499-0.988
130.376-0.6030.509-1.101
Standard thresholds
P-value Threshold
0.001 4.80916
0.0005 5.713115
0.0001 7.401125