Motif | E4F1.H12INVIVO.0.P.B |
Gene (human) | E4F1 (GeneCards) |
Gene synonyms (human) | E4F |
Gene (mouse) | E4f1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | E4F1.H12INVIVO.0.P.B |
Gene (human) | E4F1 (GeneCards) |
Gene synonyms (human) | E4F |
Gene (mouse) | E4f1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 13 |
Consensus | vdSSMGKAARdvv |
GC content | 54.98% |
Information content (bits; total / per base) | 9.976 / 0.767 |
Data sources | ChIP-Seq |
Aligned words | 1000 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 3 (20) | 0.754 | 0.827 | 0.654 | 0.742 | 0.762 | 0.84 | 2.382 | 2.808 | 50.912 | 114.0 |
Mouse | 2 (12) | 0.773 | 0.937 | 0.716 | 0.894 | 0.749 | 0.915 | 2.598 | 3.575 | 24.409 | 35.229 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | C2H2 zinc finger factors {2.3} (TFClass) |
TF family | Multiple dispersed zinc fingers {2.3.4} (TFClass) |
TF subfamily | Unclassified {2.3.4.0} (TFClass) |
TFClass ID | TFClass: 2.3.4.0.74 |
HGNC | HGNC:3121 |
MGI | MGI:109530 |
EntrezGene (human) | GeneID:1877 (SSTAR profile) |
EntrezGene (mouse) | GeneID:13560 (SSTAR profile) |
UniProt ID (human) | E4F1_HUMAN |
UniProt ID (mouse) | E4F1_MOUSE |
UniProt AC (human) | Q66K89 (TFClass) |
UniProt AC (mouse) | Q8CCE9 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 3 human, 2 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | E4F1.H12INVIVO.0.P.B.pcm |
PWM | E4F1.H12INVIVO.0.P.B.pwm |
PFM | E4F1.H12INVIVO.0.P.B.pfm |
Alignment | E4F1.H12INVIVO.0.P.B.words.tsv |
Threshold to P-value map | E4F1.H12INVIVO.0.P.B.thr |
Motif in other formats | |
JASPAR format | E4F1.H12INVIVO.0.P.B_jaspar_format.txt |
MEME format | E4F1.H12INVIVO.0.P.B_meme_format.meme |
Transfac format | E4F1.H12INVIVO.0.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 367.0 | 271.0 | 261.0 | 101.0 |
02 | 461.0 | 91.0 | 200.0 | 248.0 |
03 | 172.0 | 190.0 | 600.0 | 38.0 |
04 | 90.0 | 655.0 | 154.0 | 101.0 |
05 | 177.0 | 759.0 | 12.0 | 52.0 |
06 | 20.0 | 5.0 | 953.0 | 22.0 |
07 | 11.0 | 43.0 | 644.0 | 302.0 |
08 | 975.0 | 5.0 | 20.0 | 0.0 |
09 | 981.0 | 3.0 | 8.0 | 8.0 |
10 | 502.0 | 4.0 | 486.0 | 8.0 |
11 | 151.0 | 107.0 | 372.0 | 370.0 |
12 | 156.0 | 339.0 | 413.0 | 92.0 |
13 | 365.0 | 136.0 | 417.0 | 82.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.367 | 0.271 | 0.261 | 0.101 |
02 | 0.461 | 0.091 | 0.2 | 0.248 |
03 | 0.172 | 0.19 | 0.6 | 0.038 |
04 | 0.09 | 0.655 | 0.154 | 0.101 |
05 | 0.177 | 0.759 | 0.012 | 0.052 |
06 | 0.02 | 0.005 | 0.953 | 0.022 |
07 | 0.011 | 0.043 | 0.644 | 0.302 |
08 | 0.975 | 0.005 | 0.02 | 0.0 |
09 | 0.981 | 0.003 | 0.008 | 0.008 |
10 | 0.502 | 0.004 | 0.486 | 0.008 |
11 | 0.151 | 0.107 | 0.372 | 0.37 |
12 | 0.156 | 0.339 | 0.413 | 0.092 |
13 | 0.365 | 0.136 | 0.417 | 0.082 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.382 | 0.08 | 0.043 | -0.896 |
02 | 0.609 | -0.999 | -0.221 | -0.008 |
03 | -0.371 | -0.272 | 0.871 | -1.846 |
04 | -1.01 | 0.959 | -0.48 | -0.896 |
05 | -0.342 | 1.106 | -2.909 | -1.544 |
06 | -2.45 | -3.622 | 1.333 | -2.362 |
07 | -2.985 | -1.728 | 0.942 | 0.188 |
08 | 1.356 | -3.622 | -2.45 | -4.982 |
09 | 1.362 | -3.975 | -3.253 | -3.253 |
10 | 0.694 | -3.783 | 0.661 | -3.253 |
11 | -0.5 | -0.84 | 0.395 | 0.39 |
12 | -0.467 | 0.303 | 0.499 | -0.988 |
13 | 0.376 | -0.603 | 0.509 | -1.101 |
P-value | Threshold |
---|---|
0.001 | 4.80916 |
0.0005 | 5.713115 |
0.0001 | 7.401125 |