E4F1.H12CORE.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	E4F1.H12CORE.0.P.B
Gene (human)	E4F1 (GeneCards)
Gene synonyms (human)	E4F
Gene (mouse)	E4f1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	13
Consensus	vdSSMGKAARdvv
GC content	54.98%
Information content (bits; total / per base)	9.976 / 0.767
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (20)	0.754	0.827	0.654	0.742	0.762	0.84	2.382	2.808	50.912	114.0
Mouse	2 (12)	0.773	0.937	0.716	0.894	0.749	0.915	2.598	3.575	24.409	35.229

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.74
HGNC	HGNC:3121
MGI	MGI:109530
EntrezGene (human)	GeneID:1877 (SSTAR profile)
EntrezGene (mouse)	GeneID:13560 (SSTAR profile)
UniProt ID (human)	E4F1_HUMAN
UniProt ID (mouse)	E4F1_MOUSE
UniProt AC (human)	Q66K89 (TFClass)
UniProt AC (mouse)	Q8CCE9 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 2 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	E4F1.H12CORE.0.P.B.pcm
PWM	E4F1.H12CORE.0.P.B.pwm
PFM	E4F1.H12CORE.0.P.B.pfm
Alignment	E4F1.H12CORE.0.P.B.words.tsv
Threshold to P-value map	E4F1.H12CORE.0.P.B.thr
Motif in other formats
JASPAR format	E4F1.H12CORE.0.P.B_jaspar_format.txt
MEME format	E4F1.H12CORE.0.P.B_meme_format.meme
Transfac format	E4F1.H12CORE.0.P.B_transfac_format.txt
Homer format	E4F1.H12CORE.0.P.B_homer_format_0.001.txt E4F1.H12CORE.0.P.B_homer_format_0.0005.txt E4F1.H12CORE.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	367.0	271.0	261.0	101.0
02	461.0	91.0	200.0	248.0
03	172.0	190.0	600.0	38.0
04	90.0	655.0	154.0	101.0
05	177.0	759.0	12.0	52.0
06	20.0	5.0	953.0	22.0
07	11.0	43.0	644.0	302.0
08	975.0	5.0	20.0	0.0
09	981.0	3.0	8.0	8.0
10	502.0	4.0	486.0	8.0
11	151.0	107.0	372.0	370.0
12	156.0	339.0	413.0	92.0
13	365.0	136.0	417.0	82.0

PFM

	A	C	G	T
01	0.367	0.271	0.261	0.101
02	0.461	0.091	0.2	0.248
03	0.172	0.19	0.6	0.038
04	0.09	0.655	0.154	0.101
05	0.177	0.759	0.012	0.052
06	0.02	0.005	0.953	0.022
07	0.011	0.043	0.644	0.302
08	0.975	0.005	0.02	0.0
09	0.981	0.003	0.008	0.008
10	0.502	0.004	0.486	0.008
11	0.151	0.107	0.372	0.37
12	0.156	0.339	0.413	0.092
13	0.365	0.136	0.417	0.082

PWM

	A	C	G	T
01	0.382	0.08	0.043	-0.896
02	0.609	-0.999	-0.221	-0.008
03	-0.371	-0.272	0.871	-1.846
04	-1.01	0.959	-0.48	-0.896
05	-0.342	1.106	-2.909	-1.544
06	-2.45	-3.622	1.333	-2.362
07	-2.985	-1.728	0.942	0.188
08	1.356	-3.622	-2.45	-4.982
09	1.362	-3.975	-3.253	-3.253
10	0.694	-3.783	0.661	-3.253
11	-0.5	-0.84	0.395	0.39
12	-0.467	0.303	0.499	-0.988
13	0.376	-0.603	0.509	-1.101

Standard thresholds

P-value	Threshold
0.001	4.80916
0.0005	5.713115
0.0001	7.401125