Motif | E2F7.H12RSNP.1.P.D |
Gene (human) | E2F7 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | E2f7 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | D |
Motif | E2F7.H12RSNP.1.P.D |
Gene (human) | E2F7 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | E2f7 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | D |
Motif length | 12 |
Consensus | nKSGCGGGAARn |
GC content | 62.9% |
Information content (bits; total / per base) | 11.552 / 0.963 |
Data sources | ChIP-Seq |
Aligned words | 668 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 2 (13) | 0.762 | 0.812 | 0.719 | 0.757 | 0.756 | 0.819 | 3.004 | 3.521 | 26.319 | 113.469 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 1 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | 0.998 |
best | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | 0.998 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Fork head/winged helix factors {3.3} (TFClass) |
TF family | E2F {3.3.2} (TFClass) |
TF subfamily | E2F {3.3.2.1} (TFClass) |
TFClass ID | TFClass: 3.3.2.1.7 |
HGNC | HGNC:23820 |
MGI | MGI:1289147 |
EntrezGene (human) | GeneID:144455 (SSTAR profile) |
EntrezGene (mouse) | GeneID:52679 (SSTAR profile) |
UniProt ID (human) | E2F7_HUMAN |
UniProt ID (mouse) | E2F7_MOUSE |
UniProt AC (human) | Q96AV8 (TFClass) |
UniProt AC (mouse) | Q6S7F2 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 2 human, 0 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 0 |
PCM | E2F7.H12RSNP.1.P.D.pcm |
PWM | E2F7.H12RSNP.1.P.D.pwm |
PFM | E2F7.H12RSNP.1.P.D.pfm |
Alignment | E2F7.H12RSNP.1.P.D.words.tsv |
Threshold to P-value map | E2F7.H12RSNP.1.P.D.thr |
Motif in other formats | |
JASPAR format | E2F7.H12RSNP.1.P.D_jaspar_format.txt |
MEME format | E2F7.H12RSNP.1.P.D_meme_format.meme |
Transfac format | E2F7.H12RSNP.1.P.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 113.0 | 136.0 | 202.0 | 217.0 |
02 | 71.0 | 48.0 | 173.0 | 376.0 |
03 | 18.0 | 141.0 | 494.0 | 15.0 |
04 | 10.0 | 24.0 | 625.0 | 9.0 |
05 | 53.0 | 590.0 | 7.0 | 18.0 |
06 | 29.0 | 8.0 | 593.0 | 38.0 |
07 | 6.0 | 69.0 | 580.0 | 13.0 |
08 | 8.0 | 33.0 | 622.0 | 5.0 |
09 | 611.0 | 8.0 | 33.0 | 16.0 |
10 | 527.0 | 13.0 | 115.0 | 13.0 |
11 | 391.0 | 91.0 | 144.0 | 42.0 |
12 | 254.0 | 128.0 | 165.0 | 121.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.169 | 0.204 | 0.302 | 0.325 |
02 | 0.106 | 0.072 | 0.259 | 0.563 |
03 | 0.027 | 0.211 | 0.74 | 0.022 |
04 | 0.015 | 0.036 | 0.936 | 0.013 |
05 | 0.079 | 0.883 | 0.01 | 0.027 |
06 | 0.043 | 0.012 | 0.888 | 0.057 |
07 | 0.009 | 0.103 | 0.868 | 0.019 |
08 | 0.012 | 0.049 | 0.931 | 0.007 |
09 | 0.915 | 0.012 | 0.049 | 0.024 |
10 | 0.789 | 0.019 | 0.172 | 0.019 |
11 | 0.585 | 0.136 | 0.216 | 0.063 |
12 | 0.38 | 0.192 | 0.247 | 0.181 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.386 | -0.203 | 0.189 | 0.26 |
02 | -0.842 | -1.223 | 0.035 | 0.806 |
03 | -2.151 | -0.167 | 1.078 | -2.317 |
04 | -2.674 | -1.884 | 1.313 | -2.764 |
05 | -1.127 | 1.255 | -2.973 | -2.151 |
06 | -1.706 | -2.863 | 1.26 | -1.448 |
07 | -3.096 | -0.87 | 1.238 | -2.445 |
08 | -2.863 | -1.583 | 1.308 | -3.237 |
09 | 1.29 | -2.863 | -1.583 | -2.258 |
10 | 1.143 | -2.445 | -0.369 | -2.445 |
11 | 0.845 | -0.599 | -0.147 | -1.352 |
12 | 0.416 | -0.263 | -0.012 | -0.319 |
P-value | Threshold |
---|---|
0.001 | 4.32901 |
0.0005 | 5.25419 |
0.0001 | 7.17831 |