MotifE2F6.H12INVIVO.0.P.B
Gene (human)E2F6
(GeneCards)
Gene synonyms (human)
Gene (mouse)E2f6
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length11
ConsensusndSGCGGGARv
GC content67.06%
Information content (bits; total / per base)12.057 / 1.096
Data sourcesChIP-Seq
Aligned words998

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 7 (49) 0.764 0.834 0.628 0.75 0.774 0.832 2.435 2.836 107.456 252.538
Mouse 1 (7) 0.883 0.898 0.78 0.811 0.864 0.869 3.038 3.115 320.367 355.658

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 7.382 2.364 0.277 0.173
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classFork head/winged helix factors {3.3} (TFClass)
TF familyE2F {3.3.2} (TFClass)
TF subfamilyE2F {3.3.2.1} (TFClass)
TFClass IDTFClass: 3.3.2.1.6
HGNCHGNC:3120
MGIMGI:1354159
EntrezGene (human)GeneID:1876
(SSTAR profile)
EntrezGene (mouse)GeneID:50496
(SSTAR profile)
UniProt ID (human)E2F6_HUMAN
UniProt ID (mouse)E2F6_MOUSE
UniProt AC (human)O75461
(TFClass)
UniProt AC (mouse)O54917
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 7 human, 1 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01311.0180.0295.0212.0
02279.065.0388.0266.0
03159.0174.0661.04.0
042.06.0989.01.0
0595.0852.022.029.0
0621.06.0964.07.0
071.09.0984.04.0
088.034.0943.013.0
09961.018.09.010.0
10719.045.0222.012.0
11395.0200.0296.0107.0
PFM
ACGT
010.3120.180.2960.212
020.280.0650.3890.267
030.1590.1740.6620.004
040.0020.0060.9910.001
050.0950.8540.0220.029
060.0210.0060.9660.007
070.0010.0090.9860.004
080.0080.0340.9450.013
090.9630.0180.0090.01
100.720.0450.2220.012
110.3960.20.2970.107
PWM
ACGT
010.219-0.3240.166-0.162
020.111-1.3260.4390.064
03-0.447-0.3570.97-3.781
04-4.211-3.4821.372-4.523
05-0.9541.223-2.36-2.101
06-2.403-3.4821.347-3.36
07-4.523-3.1541.367-3.781
08-3.252-1.951.325-2.837
091.343-2.544-3.154-3.065
101.054-1.682-0.116-2.907
110.457-0.2190.17-0.838
Standard thresholds
P-value Threshold
0.001 4.055325
0.0005 5.07653
0.0001 7.22844