| Motif | DUX4.H12INVIVO.0.P.B |
| Gene (human) | DUX4 (GeneCards) |
| Gene synonyms (human) | DUX10 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | DUX4.H12INVIVO.0.P.B |
| Gene (human) | DUX4 (GeneCards) |
| Gene synonyms (human) | DUX10 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 12 |
| Consensus | TGATTRRRTTAh |
| GC content | 23.59% |
| Information content (bits; total / per base) | 16.79 / 1.399 |
| Data sources | ChIP-Seq |
| Aligned words | 1023 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 5 (27) | 0.976 | 0.998 | 0.964 | 0.996 | 0.977 | 0.996 | 6.734 | 8.164 | 695.174 | 1277.18 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 11.225 | 61.848 | 0.586 | 0.427 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | Paired-related HD {3.1.3} (TFClass) |
| TF subfamily | DUX {3.1.3.7} (TFClass) |
| TFClass ID | TFClass: 3.1.3.7.5 |
| HGNC | HGNC:50800 |
| MGI | |
| EntrezGene (human) | GeneID:100288687 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | DUX4_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q9UBX2 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 5 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | DUX4.H12INVIVO.0.P.B.pcm |
| PWM | DUX4.H12INVIVO.0.P.B.pwm |
| PFM | DUX4.H12INVIVO.0.P.B.pfm |
| Alignment | DUX4.H12INVIVO.0.P.B.words.tsv |
| Threshold to P-value map | DUX4.H12INVIVO.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | DUX4.H12INVIVO.0.P.B_jaspar_format.txt |
| MEME format | DUX4.H12INVIVO.0.P.B_meme_format.meme |
| Transfac format | DUX4.H12INVIVO.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 29.0 | 1.0 | 2.0 | 991.0 |
| 02 | 13.0 | 0.0 | 1008.0 | 2.0 |
| 03 | 1021.0 | 1.0 | 1.0 | 0.0 |
| 04 | 2.0 | 1.0 | 3.0 | 1017.0 |
| 05 | 3.0 | 4.0 | 11.0 | 1005.0 |
| 06 | 707.0 | 57.0 | 256.0 | 3.0 |
| 07 | 304.0 | 104.0 | 611.0 | 4.0 |
| 08 | 374.0 | 23.0 | 530.0 | 96.0 |
| 09 | 2.0 | 2.0 | 0.0 | 1019.0 |
| 10 | 0.0 | 14.0 | 2.0 | 1007.0 |
| 11 | 860.0 | 18.0 | 24.0 | 121.0 |
| 12 | 351.0 | 112.0 | 111.0 | 449.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.028 | 0.001 | 0.002 | 0.969 |
| 02 | 0.013 | 0.0 | 0.985 | 0.002 |
| 03 | 0.998 | 0.001 | 0.001 | 0.0 |
| 04 | 0.002 | 0.001 | 0.003 | 0.994 |
| 05 | 0.003 | 0.004 | 0.011 | 0.982 |
| 06 | 0.691 | 0.056 | 0.25 | 0.003 |
| 07 | 0.297 | 0.102 | 0.597 | 0.004 |
| 08 | 0.366 | 0.022 | 0.518 | 0.094 |
| 09 | 0.002 | 0.002 | 0.0 | 0.996 |
| 10 | 0.0 | 0.014 | 0.002 | 0.984 |
| 11 | 0.841 | 0.018 | 0.023 | 0.118 |
| 12 | 0.343 | 0.109 | 0.109 | 0.439 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.126 | -4.546 | -4.234 | 1.35 |
| 02 | -2.861 | -5.001 | 1.366 | -4.234 |
| 03 | 1.379 | -4.546 | -4.546 | -5.001 |
| 04 | -4.234 | -4.546 | -3.996 | 1.375 |
| 05 | -3.996 | -3.805 | -3.007 | 1.364 |
| 06 | 1.013 | -1.478 | 0.001 | -3.996 |
| 07 | 0.172 | -0.89 | 0.867 | -3.805 |
| 08 | 0.378 | -2.343 | 0.725 | -0.969 |
| 09 | -4.234 | -4.234 | -5.001 | 1.377 |
| 10 | -5.001 | -2.795 | -4.234 | 1.365 |
| 11 | 1.208 | -2.569 | -2.303 | -0.741 |
| 12 | 0.315 | -0.817 | -0.826 | 0.56 |
| P-value | Threshold |
|---|---|
| 0.001 | 0.911265 |
| 0.0005 | 2.39895 |
| 0.0001 | 5.601135 |