MotifDUX4.H12INVITRO.0.P.D
Gene (human)DUX4
(GeneCards)
Gene synonyms (human)DUX10
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length12
ConsensusdTGATTARRTTA
GC content24.79%
Information content (bits; total / per base)18.406 / 1.534
Data sourcesChIP-Seq
Aligned words723

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 5 (27) 0.971 0.998 0.963 0.997 0.98 0.996 6.896 8.294 691.585 1268.678

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 11.32 61.339 0.6 0.45
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPaired-related HD {3.1.3} (TFClass)
TF subfamilyDUX {3.1.3.7} (TFClass)
TFClass IDTFClass: 3.1.3.7.5
HGNCHGNC:50800
MGI
EntrezGene (human)GeneID:100288687
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)DUX4_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q9UBX2
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 5 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01291.061.0160.0211.0
0214.01.00.0708.0
030.00.0723.00.0
04723.00.00.00.0
051.00.00.0722.0
060.00.01.0722.0
07588.03.0132.00.0
08104.081.0538.00.0
09267.05.0430.021.0
100.00.00.0723.0
110.01.00.0722.0
12644.09.06.064.0
PFM
ACGT
010.4020.0840.2210.292
020.0190.0010.00.979
030.00.01.00.0
041.00.00.00.0
050.0010.00.00.999
060.00.00.0010.999
070.8130.0040.1830.0
080.1440.1120.7440.0
090.3690.0070.5950.029
100.00.00.01.0
110.00.0010.00.999
120.8910.0120.0080.089
PWM
ACGT
010.473-1.069-0.1210.153
02-2.456-4.233-4.7081.359
03-4.708-4.7081.38-4.708
041.38-4.708-4.708-4.708
05-4.233-4.708-4.7081.378
06-4.708-4.708-4.2331.378
071.173-3.67-0.311-4.708
08-0.546-0.7921.085-4.708
090.387-3.3120.861-2.086
10-4.708-4.708-4.7081.38
11-4.708-4.233-4.7081.378
121.264-2.841-3.172-1.022
Standard thresholds
P-value Threshold
0.001 -0.63577
0.0005 0.920885
0.0001 4.497575