MotifDRGX.H12RSNP.0.S.D
Gene (human)DRGX
(GeneCards)
Gene synonyms (human)PRRXL1
Gene (mouse)Drgx
Gene synonyms (mouse)Drg11, Prrxl1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length20
ConsensusnvnTAATYhRATTAvnnnnn
GC content34.09%
Information content (bits; total / per base)16.122 / 0.806
Data sourcesHT-SELEX
Aligned words9227

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.991 0.985 0.982 0.972 0.93 0.91
best 0.999 0.998 0.998 0.997 0.944 0.943
Methyl HT-SELEX, 1 experiments median 0.976 0.959 0.96 0.938 0.924 0.897
best 0.976 0.959 0.96 0.938 0.924 0.897
Non-Methyl HT-SELEX, 3 experiments median 0.998 0.997 0.992 0.99 0.935 0.923
best 0.999 0.998 0.998 0.997 0.944 0.943
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPaired-related HD {3.1.3} (TFClass)
TF subfamilyDRGX {3.1.3.6} (TFClass)
TFClass IDTFClass: 3.1.3.6.1
HGNCHGNC:21536
MGIMGI:2148204
EntrezGene (human)GeneID:644168
(SSTAR profile)
EntrezGene (mouse)GeneID:107751
(SSTAR profile)
UniProt ID (human)DRGX_HUMAN
UniProt ID (mouse)DRGX_MOUSE
UniProt AC (human)A6NNA5
(TFClass)
UniProt AC (mouse)Q8BYH0
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
011624.02817.03027.01759.0
021476.252654.253639.251457.25
031189.02941.02808.02289.0
04603.0451.096.08077.0
058453.022.0632.0120.0
069206.04.013.04.0
07109.0506.0105.08507.0
081.03048.0434.05744.0
092859.01316.01229.03823.0
106162.0256.02806.03.0
118782.024.0389.032.0
121.08.02.09216.0
1327.0268.07.08925.0
148742.015.0246.0224.0
152652.01607.04495.0473.0
161533.02829.02045.02820.0
171369.02105.02968.02785.0
181453.02793.03275.01706.0
191696.752583.753094.751851.75
201884.752457.752900.751983.75
PFM
ACGT
010.1760.3050.3280.191
020.160.2880.3940.158
030.1290.3190.3040.248
040.0650.0490.010.875
050.9160.0020.0680.013
060.9980.00.0010.0
070.0120.0550.0110.922
080.00.330.0470.623
090.310.1430.1330.414
100.6680.0280.3040.0
110.9520.0030.0420.003
120.00.0010.00.999
130.0030.0290.0010.967
140.9470.0020.0270.024
150.2870.1740.4870.051
160.1660.3070.2220.306
170.1480.2280.3220.302
180.1570.3030.3550.185
190.1840.280.3350.201
200.2040.2660.3140.215
PWM
ACGT
01-0.3510.20.271-0.271
02-0.4460.140.456-0.459
03-0.6620.2430.196-0.008
04-1.339-1.628-3.1571.252
051.298-4.555-1.292-2.938
061.383-5.907-5.018-5.907
07-3.033-1.514-3.0691.304
08-6.5560.278-1.6660.912
090.214-0.56-0.6290.505
100.982-2.1910.196-6.08
111.336-4.476-1.775-4.21
12-6.556-5.414-6.291.384
13-4.368-2.145-5.5161.352
141.332-4.895-2.23-2.323
150.139-0.3610.667-1.581
16-0.4080.204-0.120.201
17-0.521-0.0910.2520.188
18-0.4620.1910.35-0.301
19-0.3070.1130.294-0.219
20-0.2020.0630.229-0.151
Standard thresholds
P-value Threshold
0.001 1.39671
0.0005 2.88046
0.0001 5.93431