Motif | DRGX.H12RSNP.0.S.D |
Gene (human) | DRGX (GeneCards) |
Gene synonyms (human) | PRRXL1 |
Gene (mouse) | Drgx |
Gene synonyms (mouse) | Drg11, Prrxl1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif | DRGX.H12RSNP.0.S.D |
Gene (human) | DRGX (GeneCards) |
Gene synonyms (human) | PRRXL1 |
Gene (mouse) | Drgx |
Gene synonyms (mouse) | Drg11, Prrxl1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif length | 20 |
Consensus | nvnTAATYhRATTAvnnnnn |
GC content | 34.09% |
Information content (bits; total / per base) | 16.122 / 0.806 |
Data sources | HT-SELEX |
Aligned words | 9227 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.991 | 0.985 | 0.982 | 0.972 | 0.93 | 0.91 |
best | 0.999 | 0.998 | 0.998 | 0.997 | 0.944 | 0.943 | |
Methyl HT-SELEX, 1 experiments | median | 0.976 | 0.959 | 0.96 | 0.938 | 0.924 | 0.897 |
best | 0.976 | 0.959 | 0.96 | 0.938 | 0.924 | 0.897 | |
Non-Methyl HT-SELEX, 3 experiments | median | 0.998 | 0.997 | 0.992 | 0.99 | 0.935 | 0.923 |
best | 0.999 | 0.998 | 0.998 | 0.997 | 0.944 | 0.943 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | Paired-related HD {3.1.3} (TFClass) |
TF subfamily | DRGX {3.1.3.6} (TFClass) |
TFClass ID | TFClass: 3.1.3.6.1 |
HGNC | HGNC:21536 |
MGI | MGI:2148204 |
EntrezGene (human) | GeneID:644168 (SSTAR profile) |
EntrezGene (mouse) | GeneID:107751 (SSTAR profile) |
UniProt ID (human) | DRGX_HUMAN |
UniProt ID (mouse) | DRGX_MOUSE |
UniProt AC (human) | A6NNA5 (TFClass) |
UniProt AC (mouse) | Q8BYH0 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 1 |
PCM | DRGX.H12RSNP.0.S.D.pcm |
PWM | DRGX.H12RSNP.0.S.D.pwm |
PFM | DRGX.H12RSNP.0.S.D.pfm |
Alignment | DRGX.H12RSNP.0.S.D.words.tsv |
Threshold to P-value map | DRGX.H12RSNP.0.S.D.thr |
Motif in other formats | |
JASPAR format | DRGX.H12RSNP.0.S.D_jaspar_format.txt |
MEME format | DRGX.H12RSNP.0.S.D_meme_format.meme |
Transfac format | DRGX.H12RSNP.0.S.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1624.0 | 2817.0 | 3027.0 | 1759.0 |
02 | 1476.25 | 2654.25 | 3639.25 | 1457.25 |
03 | 1189.0 | 2941.0 | 2808.0 | 2289.0 |
04 | 603.0 | 451.0 | 96.0 | 8077.0 |
05 | 8453.0 | 22.0 | 632.0 | 120.0 |
06 | 9206.0 | 4.0 | 13.0 | 4.0 |
07 | 109.0 | 506.0 | 105.0 | 8507.0 |
08 | 1.0 | 3048.0 | 434.0 | 5744.0 |
09 | 2859.0 | 1316.0 | 1229.0 | 3823.0 |
10 | 6162.0 | 256.0 | 2806.0 | 3.0 |
11 | 8782.0 | 24.0 | 389.0 | 32.0 |
12 | 1.0 | 8.0 | 2.0 | 9216.0 |
13 | 27.0 | 268.0 | 7.0 | 8925.0 |
14 | 8742.0 | 15.0 | 246.0 | 224.0 |
15 | 2652.0 | 1607.0 | 4495.0 | 473.0 |
16 | 1533.0 | 2829.0 | 2045.0 | 2820.0 |
17 | 1369.0 | 2105.0 | 2968.0 | 2785.0 |
18 | 1453.0 | 2793.0 | 3275.0 | 1706.0 |
19 | 1696.75 | 2583.75 | 3094.75 | 1851.75 |
20 | 1884.75 | 2457.75 | 2900.75 | 1983.75 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.176 | 0.305 | 0.328 | 0.191 |
02 | 0.16 | 0.288 | 0.394 | 0.158 |
03 | 0.129 | 0.319 | 0.304 | 0.248 |
04 | 0.065 | 0.049 | 0.01 | 0.875 |
05 | 0.916 | 0.002 | 0.068 | 0.013 |
06 | 0.998 | 0.0 | 0.001 | 0.0 |
07 | 0.012 | 0.055 | 0.011 | 0.922 |
08 | 0.0 | 0.33 | 0.047 | 0.623 |
09 | 0.31 | 0.143 | 0.133 | 0.414 |
10 | 0.668 | 0.028 | 0.304 | 0.0 |
11 | 0.952 | 0.003 | 0.042 | 0.003 |
12 | 0.0 | 0.001 | 0.0 | 0.999 |
13 | 0.003 | 0.029 | 0.001 | 0.967 |
14 | 0.947 | 0.002 | 0.027 | 0.024 |
15 | 0.287 | 0.174 | 0.487 | 0.051 |
16 | 0.166 | 0.307 | 0.222 | 0.306 |
17 | 0.148 | 0.228 | 0.322 | 0.302 |
18 | 0.157 | 0.303 | 0.355 | 0.185 |
19 | 0.184 | 0.28 | 0.335 | 0.201 |
20 | 0.204 | 0.266 | 0.314 | 0.215 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.351 | 0.2 | 0.271 | -0.271 |
02 | -0.446 | 0.14 | 0.456 | -0.459 |
03 | -0.662 | 0.243 | 0.196 | -0.008 |
04 | -1.339 | -1.628 | -3.157 | 1.252 |
05 | 1.298 | -4.555 | -1.292 | -2.938 |
06 | 1.383 | -5.907 | -5.018 | -5.907 |
07 | -3.033 | -1.514 | -3.069 | 1.304 |
08 | -6.556 | 0.278 | -1.666 | 0.912 |
09 | 0.214 | -0.56 | -0.629 | 0.505 |
10 | 0.982 | -2.191 | 0.196 | -6.08 |
11 | 1.336 | -4.476 | -1.775 | -4.21 |
12 | -6.556 | -5.414 | -6.29 | 1.384 |
13 | -4.368 | -2.145 | -5.516 | 1.352 |
14 | 1.332 | -4.895 | -2.23 | -2.323 |
15 | 0.139 | -0.361 | 0.667 | -1.581 |
16 | -0.408 | 0.204 | -0.12 | 0.201 |
17 | -0.521 | -0.091 | 0.252 | 0.188 |
18 | -0.462 | 0.191 | 0.35 | -0.301 |
19 | -0.307 | 0.113 | 0.294 | -0.219 |
20 | -0.202 | 0.063 | 0.229 | -0.151 |
P-value | Threshold |
---|---|
0.001 | 1.39671 |
0.0005 | 2.88046 |
0.0001 | 5.93431 |