MotifDRGX.H12INVIVO.1.SM.D
Gene (human)DRGX
(GeneCards)
Gene synonyms (human)PRRXL1
Gene (mouse)Drgx
Gene synonyms (mouse)Drg11, Prrxl1
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length15
ConsensusnhdRnbYAATTAvbn
GC content32.5%
Information content (bits; total / per base)12.02 / 0.801
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words7101

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.985 0.976 0.973 0.959 0.934 0.905
best 0.997 0.996 0.993 0.99 0.943 0.941
Methyl HT-SELEX, 1 experiments median 0.966 0.942 0.952 0.923 0.927 0.894
best 0.966 0.942 0.952 0.923 0.927 0.894
Non-Methyl HT-SELEX, 3 experiments median 0.996 0.993 0.982 0.976 0.942 0.916
best 0.997 0.996 0.993 0.99 0.943 0.941
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPaired-related HD {3.1.3} (TFClass)
TF subfamilyDRGX {3.1.3.6} (TFClass)
TFClass IDTFClass: 3.1.3.6.1
HGNCHGNC:21536
MGIMGI:2148204
EntrezGene (human)GeneID:644168
(SSTAR profile)
EntrezGene (mouse)GeneID:107751
(SSTAR profile)
UniProt ID (human)DRGX_HUMAN
UniProt ID (mouse)DRGX_MOUSE
UniProt AC (human)A6NNA5
(TFClass)
UniProt AC (mouse)Q8BYH0
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
011924.51474.51656.52045.5
02948.751051.75827.754272.75
032940.0940.01757.01464.0
044945.0877.0927.0352.0
051423.02072.01200.02406.0
06220.02651.01736.02494.0
07301.02252.0219.04329.0
085857.0231.01011.02.0
097101.00.00.00.0
100.00.00.07101.0
110.01.00.07100.0
127079.00.022.00.0
132177.01230.03310.0384.0
14392.03522.01539.01648.0
151515.52035.52069.51480.5
PFM
ACGT
010.2710.2080.2330.288
020.1340.1480.1170.602
030.4140.1320.2470.206
040.6960.1240.1310.05
050.20.2920.1690.339
060.0310.3730.2440.351
070.0420.3170.0310.61
080.8250.0330.1420.0
091.00.00.00.0
100.00.00.01.0
110.00.00.01.0
120.9970.00.0030.0
130.3070.1730.4660.054
140.0550.4960.2170.232
150.2130.2870.2910.208
PWM
ACGT
010.081-0.185-0.0690.142
02-0.625-0.523-0.7620.878
030.504-0.635-0.01-0.193
041.024-0.704-0.649-1.613
05-0.2210.154-0.3910.304
06-2.0790.401-0.0220.34
07-1.7680.238-2.0840.891
081.193-2.031-0.562-6.044
091.385-6.687-6.687-6.687
10-6.687-6.687-6.6871.385
11-6.687-6.314-6.6871.385
121.382-6.687-4.296-6.687
130.204-0.3660.622-1.527
14-1.5060.684-0.143-0.074
15-0.1580.1370.153-0.181
Standard thresholds
P-value Threshold
0.001 3.82261
0.0005 5.26326
0.0001 7.51861