Motif | DRGX.H12CORE.1.SM.B |
Gene (human) | DRGX (GeneCards) |
Gene synonyms (human) | PRRXL1 |
Gene (mouse) | Drgx |
Gene synonyms (mouse) | Drg11, Prrxl1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | DRGX.H12CORE.1.SM.B |
Gene (human) | DRGX (GeneCards) |
Gene synonyms (human) | PRRXL1 |
Gene (mouse) | Drgx |
Gene synonyms (mouse) | Drg11, Prrxl1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 15 |
Consensus | nhdRnbYAATTAvbn |
GC content | 32.5% |
Information content (bits; total / per base) | 12.02 / 0.801 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 7101 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.985 | 0.976 | 0.973 | 0.959 | 0.934 | 0.905 |
best | 0.997 | 0.996 | 0.993 | 0.99 | 0.943 | 0.941 | |
Methyl HT-SELEX, 1 experiments | median | 0.966 | 0.942 | 0.952 | 0.923 | 0.927 | 0.894 |
best | 0.966 | 0.942 | 0.952 | 0.923 | 0.927 | 0.894 | |
Non-Methyl HT-SELEX, 3 experiments | median | 0.996 | 0.993 | 0.982 | 0.976 | 0.942 | 0.916 |
best | 0.997 | 0.996 | 0.993 | 0.99 | 0.943 | 0.941 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | Paired-related HD {3.1.3} (TFClass) |
TF subfamily | DRGX {3.1.3.6} (TFClass) |
TFClass ID | TFClass: 3.1.3.6.1 |
HGNC | HGNC:21536 |
MGI | MGI:2148204 |
EntrezGene (human) | GeneID:644168 (SSTAR profile) |
EntrezGene (mouse) | GeneID:107751 (SSTAR profile) |
UniProt ID (human) | DRGX_HUMAN |
UniProt ID (mouse) | DRGX_MOUSE |
UniProt AC (human) | A6NNA5 (TFClass) |
UniProt AC (mouse) | Q8BYH0 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 1 |
PCM | DRGX.H12CORE.1.SM.B.pcm |
PWM | DRGX.H12CORE.1.SM.B.pwm |
PFM | DRGX.H12CORE.1.SM.B.pfm |
Alignment | DRGX.H12CORE.1.SM.B.words.tsv |
Threshold to P-value map | DRGX.H12CORE.1.SM.B.thr |
Motif in other formats | |
JASPAR format | DRGX.H12CORE.1.SM.B_jaspar_format.txt |
MEME format | DRGX.H12CORE.1.SM.B_meme_format.meme |
Transfac format | DRGX.H12CORE.1.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1924.5 | 1474.5 | 1656.5 | 2045.5 |
02 | 948.75 | 1051.75 | 827.75 | 4272.75 |
03 | 2940.0 | 940.0 | 1757.0 | 1464.0 |
04 | 4945.0 | 877.0 | 927.0 | 352.0 |
05 | 1423.0 | 2072.0 | 1200.0 | 2406.0 |
06 | 220.0 | 2651.0 | 1736.0 | 2494.0 |
07 | 301.0 | 2252.0 | 219.0 | 4329.0 |
08 | 5857.0 | 231.0 | 1011.0 | 2.0 |
09 | 7101.0 | 0.0 | 0.0 | 0.0 |
10 | 0.0 | 0.0 | 0.0 | 7101.0 |
11 | 0.0 | 1.0 | 0.0 | 7100.0 |
12 | 7079.0 | 0.0 | 22.0 | 0.0 |
13 | 2177.0 | 1230.0 | 3310.0 | 384.0 |
14 | 392.0 | 3522.0 | 1539.0 | 1648.0 |
15 | 1515.5 | 2035.5 | 2069.5 | 1480.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.271 | 0.208 | 0.233 | 0.288 |
02 | 0.134 | 0.148 | 0.117 | 0.602 |
03 | 0.414 | 0.132 | 0.247 | 0.206 |
04 | 0.696 | 0.124 | 0.131 | 0.05 |
05 | 0.2 | 0.292 | 0.169 | 0.339 |
06 | 0.031 | 0.373 | 0.244 | 0.351 |
07 | 0.042 | 0.317 | 0.031 | 0.61 |
08 | 0.825 | 0.033 | 0.142 | 0.0 |
09 | 1.0 | 0.0 | 0.0 | 0.0 |
10 | 0.0 | 0.0 | 0.0 | 1.0 |
11 | 0.0 | 0.0 | 0.0 | 1.0 |
12 | 0.997 | 0.0 | 0.003 | 0.0 |
13 | 0.307 | 0.173 | 0.466 | 0.054 |
14 | 0.055 | 0.496 | 0.217 | 0.232 |
15 | 0.213 | 0.287 | 0.291 | 0.208 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.081 | -0.185 | -0.069 | 0.142 |
02 | -0.625 | -0.523 | -0.762 | 0.878 |
03 | 0.504 | -0.635 | -0.01 | -0.193 |
04 | 1.024 | -0.704 | -0.649 | -1.613 |
05 | -0.221 | 0.154 | -0.391 | 0.304 |
06 | -2.079 | 0.401 | -0.022 | 0.34 |
07 | -1.768 | 0.238 | -2.084 | 0.891 |
08 | 1.193 | -2.031 | -0.562 | -6.044 |
09 | 1.385 | -6.687 | -6.687 | -6.687 |
10 | -6.687 | -6.687 | -6.687 | 1.385 |
11 | -6.687 | -6.314 | -6.687 | 1.385 |
12 | 1.382 | -6.687 | -4.296 | -6.687 |
13 | 0.204 | -0.366 | 0.622 | -1.527 |
14 | -1.506 | 0.684 | -0.143 | -0.074 |
15 | -0.158 | 0.137 | 0.153 | -0.181 |
P-value | Threshold |
---|---|
0.001 | 3.82261 |
0.0005 | 5.26326 |
0.0001 | 7.51861 |