Motif | DPRX.H12INVIVO.0.SM.D |
Gene (human) | DPRX (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif | DPRX.H12INVIVO.0.SM.D |
Gene (human) | DPRX (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif length | 12 |
Consensus | nvGGATTAdbnn |
GC content | 45.58% |
Information content (bits; total / per base) | 12.753 / 1.063 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 8868 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.997 | 0.995 | 0.993 | 0.99 | 0.968 | 0.962 |
best | 0.998 | 0.996 | 0.996 | 0.993 | 0.984 | 0.978 | |
Methyl HT-SELEX, 1 experiments | median | 0.998 | 0.996 | 0.996 | 0.993 | 0.984 | 0.978 |
best | 0.998 | 0.996 | 0.996 | 0.993 | 0.984 | 0.978 | |
Non-Methyl HT-SELEX, 3 experiments | median | 0.997 | 0.994 | 0.992 | 0.988 | 0.953 | 0.947 |
best | 0.998 | 0.996 | 0.995 | 0.993 | 0.983 | 0.977 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | Paired-related HD {3.1.3} (TFClass) |
TF subfamily | DPRX {3.1.3.5} (TFClass) |
TFClass ID | TFClass: 3.1.3.5.1 |
HGNC | HGNC:32166 |
MGI | |
EntrezGene (human) | GeneID:503834 (SSTAR profile) |
EntrezGene (mouse) | |
UniProt ID (human) | DPRX_HUMAN |
UniProt ID (mouse) | |
UniProt AC (human) | A6NFQ7 (TFClass) |
UniProt AC (mouse) | |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 1 |
PCM | DPRX.H12INVIVO.0.SM.D.pcm |
PWM | DPRX.H12INVIVO.0.SM.D.pwm |
PFM | DPRX.H12INVIVO.0.SM.D.pfm |
Alignment | DPRX.H12INVIVO.0.SM.D.words.tsv |
Threshold to P-value map | DPRX.H12INVIVO.0.SM.D.thr |
Motif in other formats | |
JASPAR format | DPRX.H12INVIVO.0.SM.D_jaspar_format.txt |
MEME format | DPRX.H12INVIVO.0.SM.D_meme_format.meme |
Transfac format | DPRX.H12INVIVO.0.SM.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 2564.0 | 2097.0 | 2602.0 | 1605.0 |
02 | 1639.0 | 3421.0 | 2458.0 | 1350.0 |
03 | 2.0 | 0.0 | 8866.0 | 0.0 |
04 | 0.0 | 0.0 | 8868.0 | 0.0 |
05 | 8868.0 | 0.0 | 0.0 | 0.0 |
06 | 0.0 | 0.0 | 0.0 | 8868.0 |
07 | 0.0 | 0.0 | 0.0 | 8868.0 |
08 | 8868.0 | 0.0 | 0.0 | 0.0 |
09 | 2879.0 | 464.0 | 2761.0 | 2764.0 |
10 | 559.0 | 4939.0 | 1729.0 | 1641.0 |
11 | 1705.5 | 3330.5 | 2080.5 | 1751.5 |
12 | 1916.5 | 2459.5 | 2432.5 | 2059.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.289 | 0.236 | 0.293 | 0.181 |
02 | 0.185 | 0.386 | 0.277 | 0.152 |
03 | 0.0 | 0.0 | 1.0 | 0.0 |
04 | 0.0 | 0.0 | 1.0 | 0.0 |
05 | 1.0 | 0.0 | 0.0 | 0.0 |
06 | 0.0 | 0.0 | 0.0 | 1.0 |
07 | 0.0 | 0.0 | 0.0 | 1.0 |
08 | 1.0 | 0.0 | 0.0 | 0.0 |
09 | 0.325 | 0.052 | 0.311 | 0.312 |
10 | 0.063 | 0.557 | 0.195 | 0.185 |
11 | 0.192 | 0.376 | 0.235 | 0.198 |
12 | 0.216 | 0.277 | 0.274 | 0.232 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.145 | -0.056 | 0.16 | -0.323 |
02 | -0.302 | 0.433 | 0.103 | -0.495 |
03 | -6.253 | -6.884 | 1.385 | -6.884 |
04 | -6.884 | -6.884 | 1.386 | -6.884 |
05 | 1.386 | -6.884 | -6.884 | -6.884 |
06 | -6.884 | -6.884 | -6.884 | 1.386 |
07 | -6.884 | -6.884 | -6.884 | 1.386 |
08 | 1.386 | -6.884 | -6.884 | -6.884 |
09 | 0.261 | -1.56 | 0.219 | 0.22 |
10 | -1.375 | 0.8 | -0.248 | -0.3 |
11 | -0.262 | 0.407 | -0.063 | -0.235 |
12 | -0.145 | 0.104 | 0.093 | -0.074 |
P-value | Threshold |
---|---|
0.001 | 0.615265 |
0.0005 | 1.25032 |
0.0001 | 8.02542 |