Motif | DPF1.H12INVIVO.0.SM.D |
Gene (human) | DPF1 (GeneCards) |
Gene synonyms (human) | BAF45B, NEUD4 |
Gene (mouse) | Dpf1 |
Gene synonyms (mouse) | Baf45b, Neud4 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif | DPF1.H12INVIVO.0.SM.D |
Gene (human) | DPF1 (GeneCards) |
Gene synonyms (human) | BAF45B, NEUD4 |
Gene (mouse) | Dpf1 |
Gene synonyms (mouse) | Baf45b, Neud4 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif length | 14 |
Consensus | ndbMMCCTATAKvn |
GC content | 46.87% |
Information content (bits; total / per base) | 13.91 / 0.994 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 9954 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.946 | 0.936 | 0.768 | 0.779 | 0.635 | 0.666 |
best | 0.96 | 0.949 | 0.798 | 0.803 | 0.654 | 0.683 | |
Methyl HT-SELEX, 1 experiments | median | 0.932 | 0.924 | 0.738 | 0.755 | 0.616 | 0.649 |
best | 0.932 | 0.924 | 0.738 | 0.755 | 0.616 | 0.649 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.96 | 0.949 | 0.798 | 0.803 | 0.654 | 0.683 |
best | 0.96 | 0.949 | 0.798 | 0.803 | 0.654 | 0.683 |
TF superclass | Yet undefined DNA-binding domains {0} (TFClass) |
TF class | Uncharacterized {0.0} (TFClass) |
TF family | Unannotated {0.0.9} (TFClass) |
TF subfamily | {0.0.9.0} (TFClass) |
TFClass ID | TFClass: 0.0.9.0.7 |
HGNC | HGNC:20225 |
MGI | MGI:1352748 |
EntrezGene (human) | GeneID:8193 (SSTAR profile) |
EntrezGene (mouse) | GeneID:29861 (SSTAR profile) |
UniProt ID (human) | DPF1_HUMAN |
UniProt ID (mouse) | DPF1_MOUSE |
UniProt AC (human) | Q92782 (TFClass) |
UniProt AC (mouse) | Q9QX66 (TFClass) |
GRECO-DB-TF | no |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | DPF1.H12INVIVO.0.SM.D.pcm |
PWM | DPF1.H12INVIVO.0.SM.D.pwm |
PFM | DPF1.H12INVIVO.0.SM.D.pfm |
Alignment | DPF1.H12INVIVO.0.SM.D.words.tsv |
Threshold to P-value map | DPF1.H12INVIVO.0.SM.D.thr |
Motif in other formats | |
JASPAR format | DPF1.H12INVIVO.0.SM.D_jaspar_format.txt |
MEME format | DPF1.H12INVIVO.0.SM.D_meme_format.meme |
Transfac format | DPF1.H12INVIVO.0.SM.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 2075.75 | 2697.75 | 2475.75 | 2704.75 |
02 | 2327.25 | 1275.25 | 3899.25 | 2452.25 |
03 | 1117.0 | 1137.0 | 3967.0 | 3733.0 |
04 | 1415.0 | 7305.0 | 301.0 | 933.0 |
05 | 4952.0 | 2751.0 | 2182.0 | 69.0 |
06 | 11.0 | 9917.0 | 9.0 | 17.0 |
07 | 195.0 | 9421.0 | 304.0 | 34.0 |
08 | 0.0 | 0.0 | 0.0 | 9954.0 |
09 | 9921.0 | 31.0 | 2.0 | 0.0 |
10 | 7.0 | 34.0 | 0.0 | 9913.0 |
11 | 9185.0 | 33.0 | 734.0 | 2.0 |
12 | 30.0 | 863.0 | 7103.0 | 1958.0 |
13 | 4917.25 | 2562.25 | 2076.25 | 398.25 |
14 | 2898.5 | 2049.5 | 2192.5 | 2813.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.209 | 0.271 | 0.249 | 0.272 |
02 | 0.234 | 0.128 | 0.392 | 0.246 |
03 | 0.112 | 0.114 | 0.399 | 0.375 |
04 | 0.142 | 0.734 | 0.03 | 0.094 |
05 | 0.497 | 0.276 | 0.219 | 0.007 |
06 | 0.001 | 0.996 | 0.001 | 0.002 |
07 | 0.02 | 0.946 | 0.031 | 0.003 |
08 | 0.0 | 0.0 | 0.0 | 1.0 |
09 | 0.997 | 0.003 | 0.0 | 0.0 |
10 | 0.001 | 0.003 | 0.0 | 0.996 |
11 | 0.923 | 0.003 | 0.074 | 0.0 |
12 | 0.003 | 0.087 | 0.714 | 0.197 |
13 | 0.494 | 0.257 | 0.209 | 0.04 |
14 | 0.291 | 0.206 | 0.22 | 0.283 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.181 | 0.081 | -0.005 | 0.083 |
02 | -0.067 | -0.668 | 0.449 | -0.015 |
03 | -0.8 | -0.782 | 0.466 | 0.405 |
04 | -0.564 | 1.076 | -2.106 | -0.979 |
05 | 0.688 | 0.1 | -0.131 | -3.553 |
06 | -5.232 | 1.382 | -5.395 | -4.86 |
07 | -2.536 | 1.331 | -2.096 | -4.229 |
08 | -6.987 | -6.987 | -6.987 | 1.386 |
09 | 1.382 | -4.315 | -6.361 | -6.987 |
10 | -5.59 | -4.229 | -6.987 | 1.381 |
11 | 1.305 | -4.256 | -1.219 | -6.361 |
12 | -4.345 | -1.057 | 1.048 | -0.24 |
13 | 0.681 | 0.029 | -0.181 | -1.828 |
14 | 0.152 | -0.194 | -0.127 | 0.123 |
P-value | Threshold |
---|---|
0.001 | 2.18071 |
0.0005 | 3.70146 |
0.0001 | 6.89331 |