Motif | DMTA2.H12RSNP.0.SM.D |
Gene (human) | DMRTA2 (GeneCards) |
Gene synonyms (human) | DMRT5 |
Gene (mouse) | Dmrta2 |
Gene synonyms (mouse) | Dmrt5 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif | DMTA2.H12RSNP.0.SM.D |
Gene (human) | DMRTA2 (GeneCards) |
Gene synonyms (human) | DMRT5 |
Gene (mouse) | Dmrta2 |
Gene synonyms (mouse) | Dmrt5 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif length | 16 |
Consensus | nhhRhTGTAWCddhhn |
GC content | 35.32% |
Information content (bits; total / per base) | 11.955 / 0.747 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 9246 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.987 | 0.977 | 0.974 | 0.961 | 0.939 | 0.921 |
best | 0.987 | 0.979 | 0.975 | 0.961 | 0.946 | 0.927 | |
Methyl HT-SELEX, 1 experiments | median | 0.986 | 0.976 | 0.975 | 0.961 | 0.946 | 0.927 |
best | 0.986 | 0.976 | 0.975 | 0.961 | 0.946 | 0.927 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.987 | 0.979 | 0.973 | 0.96 | 0.933 | 0.915 |
best | 0.987 | 0.979 | 0.973 | 0.96 | 0.933 | 0.915 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | DM-type intertwined zinc finger factors {2.5} (TFClass) |
TF family | DMRT {2.5.1} (TFClass) |
TF subfamily | {2.5.1.0} (TFClass) |
TFClass ID | TFClass: 2.5.1.0.5 |
HGNC | HGNC:13908 |
MGI | MGI:2653629 |
EntrezGene (human) | GeneID:63950 (SSTAR profile) |
EntrezGene (mouse) | GeneID:242620 (SSTAR profile) |
UniProt ID (human) | DMTA2_HUMAN |
UniProt ID (mouse) | DMTA2_MOUSE |
UniProt AC (human) | Q96SC8 (TFClass) |
UniProt AC (mouse) | A2A9A2 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | DMTA2.H12RSNP.0.SM.D.pcm |
PWM | DMTA2.H12RSNP.0.SM.D.pwm |
PFM | DMTA2.H12RSNP.0.SM.D.pfm |
Alignment | DMTA2.H12RSNP.0.SM.D.words.tsv |
Threshold to P-value map | DMTA2.H12RSNP.0.SM.D.thr |
Motif in other formats | |
JASPAR format | DMTA2.H12RSNP.0.SM.D_jaspar_format.txt |
MEME format | DMTA2.H12RSNP.0.SM.D_meme_format.meme |
Transfac format | DMTA2.H12RSNP.0.SM.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 2508.75 | 1657.75 | 2870.75 | 2208.75 |
02 | 4258.5 | 1830.5 | 1435.5 | 1721.5 |
03 | 2488.0 | 4129.0 | 1036.0 | 1593.0 |
04 | 7384.0 | 653.0 | 677.0 | 532.0 |
05 | 4708.0 | 1822.0 | 300.0 | 2416.0 |
06 | 594.0 | 8.0 | 9.0 | 8635.0 |
07 | 0.0 | 0.0 | 9246.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 9246.0 |
09 | 7349.0 | 20.0 | 18.0 | 1859.0 |
10 | 4293.0 | 8.0 | 1786.0 | 3159.0 |
11 | 18.0 | 9131.0 | 56.0 | 41.0 |
12 | 5065.0 | 972.0 | 2163.0 | 1046.0 |
13 | 4718.0 | 978.0 | 1291.0 | 2259.0 |
14 | 1852.0 | 1762.0 | 1108.0 | 4524.0 |
15 | 2015.75 | 1622.75 | 1422.75 | 4184.75 |
16 | 1616.5 | 2203.5 | 2041.5 | 3384.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.271 | 0.179 | 0.31 | 0.239 |
02 | 0.461 | 0.198 | 0.155 | 0.186 |
03 | 0.269 | 0.447 | 0.112 | 0.172 |
04 | 0.799 | 0.071 | 0.073 | 0.058 |
05 | 0.509 | 0.197 | 0.032 | 0.261 |
06 | 0.064 | 0.001 | 0.001 | 0.934 |
07 | 0.0 | 0.0 | 1.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 1.0 |
09 | 0.795 | 0.002 | 0.002 | 0.201 |
10 | 0.464 | 0.001 | 0.193 | 0.342 |
11 | 0.002 | 0.988 | 0.006 | 0.004 |
12 | 0.548 | 0.105 | 0.234 | 0.113 |
13 | 0.51 | 0.106 | 0.14 | 0.244 |
14 | 0.2 | 0.191 | 0.12 | 0.489 |
15 | 0.218 | 0.176 | 0.154 | 0.453 |
16 | 0.175 | 0.238 | 0.221 | 0.366 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.082 | -0.332 | 0.216 | -0.045 |
02 | 0.611 | -0.233 | -0.476 | -0.294 |
03 | 0.074 | 0.58 | -0.801 | -0.372 |
04 | 1.161 | -1.262 | -1.226 | -1.466 |
05 | 0.711 | -0.238 | -2.035 | 0.044 |
06 | -1.356 | -5.416 | -5.323 | 1.317 |
07 | -6.921 | -6.921 | 1.386 | -6.921 |
08 | -6.921 | -6.921 | -6.921 | 1.386 |
09 | 1.156 | -4.643 | -4.737 | -0.218 |
10 | 0.619 | -5.416 | -0.258 | 0.312 |
11 | -4.737 | 1.373 | -3.681 | -3.979 |
12 | 0.784 | -0.865 | -0.066 | -0.792 |
13 | 0.713 | -0.859 | -0.582 | -0.023 |
14 | -0.221 | -0.271 | -0.734 | 0.671 |
15 | -0.137 | -0.353 | -0.485 | 0.593 |
16 | -0.357 | -0.048 | -0.124 | 0.381 |
P-value | Threshold |
---|---|
0.001 | 3.98186 |
0.0005 | 5.26496 |
0.0001 | 7.45571 |